基于深度学习理论的蛋白质-RNA相互作用特征分析及预测研究

61873212
2018
F0305.生物、医学信息系统与技术
李丽萍
面上项目
副教授
西京学院
63万元
网络模块分析;分子相互作用预测;遗传相互作用网络;蛋白质网络
2019-01-01到2022-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 In silico drug repositioning using deep learning and comprehensive similarity measures 期刊论文 Hai-Cheng Yi;Zhu-Hong You;Lei Wang;Xiao-Rui Su;Xi Zhou;Tong-Hai Jiang
2 BNEMDI: a novel miRNA-drug interaction prediction model based on multi-source information with a large-scale biological network 期刊论文 Yong-Jian Guan;Chang-Qing Yu;Li-Ping Li;Zhu-Hong You;Zhong-Hao Ren;Jie Pan;Yue-Chao Li
3 Graph representation learning in bioinformatics: trends, methods and applications 期刊论文 Hai-ChengYi;Zhu-Hong You;De-ShuangHuang;Chee Keong Kwoh
4 DANE-MDA: Predicting microRNA-disease associations via deep attributed network embedding 期刊论文 Bo-Ya Ji;Zhu-Hong You;Yi Wang;Zheng-Wei Li;Leon Wong
5 DeepWalk based method to predict lncRNA-miRNA associations via lncRNA-miRNA-disease-protein-drug graph 期刊论文 Long Yang;Li-Ping Li;Hai-Cheng Yi
6 Predicting miRNA-disease association from heterogeneous information network with GraRep embedding model 期刊论文 Bo-Ya Ji;Zhu-Hong You;Li Cheng;Ji-Ren Zhou;Daniyal Alghazzawi;Li-Ping Li
7 RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information 期刊论文 Hai-Cheng Yi;Zhu-Hong You;Mei-Neng Wang;Yan-Bin Wang;Ji-Ren Zhou
8 Self-Interacting Proteins Prediction from PSSM Based on Evolutionary Information 期刊论文 Zheng Wang;Yang Li;Li-Ping Li;Zhu-Hong You;Wen-Zhun Huang
9 A deep learning-based method for drug-target interaction prediction based on long short-term memory neural network 期刊论文 Yan-Bin Wang;Zhu-Hong You;Shan Yang;Hai-Cheng Yi;Zhan-Heng Chen;Kai Zheng
10 GNMFLMI: Graph Regularized Nonnegative Matrix Factorization for Predicting LncRNA-MiRNA Interactions 期刊论文 Mei-Neng Wang;Zhu-Hong You;Li-Ping Li;Leon Wong;Zhan-Heng Chen;Cheng-Zhi Gan
11 Robust and accurate prediction of self-interacting proteins from protein sequence information by exploiting weighted sparse representation based classifier 期刊论文 Yang Li;Xue-Gang Hu;Zhu-Hong You;Li-Ping Li;Pei-Pei Li;Yan-Bin Wang;Yu-An Huang
12 Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network 期刊论文 Hai-Cheng Yi;Zhu-Hong You;De-Shuang Huang;Zhen-Hao Guo;Keith CC Chan;Yangming Li
13 SAEROF: an ensemble approach for large-scale drug-disease association prediction by incorporating rotation forest and sparse autoencoder deep neural network 期刊论文 Han-Jing Jiang;Yu-An Huang;Zhu-Hong You
14 Predicting protein-protein interactions via random ferns with evolutionary matrix representation 期刊论文 Yang Li;Zheng Wang;Zhu-Hong You;Li-Ping Li;Xuegang Hu
15 Ensemble Learning Prediction of Drug-Target Interactions Using GIST Descriptor Extracted from PSSM-Based Evolutionary Information 期刊论文 Xinke Zhan;Zhu-Hong You;Changqing Yu;Liping Li;Jie Pan
16 NEMPD: a network embedding-based method for predicting miRNA-disease associations by preserving behavior and attribute information 期刊论文 Bo-Ya Ji;Zhu-Hong You;Zhan-Heng Chen;Leon Wong;Hai-Cheng Yi
17 iMDA-BN: Identification of miRNA-disease associations based on the biological network and graph embedding algorithm 期刊论文 Kai Zheng;Zhu-Hong You;Lei Wang;Zhen-Hao Guo
18 MIPDH: A novel computational model for predicting microRNA-mRNA interactions by deep walk on a heterogeneous network 期刊论文 Leon Wong;Zhu-Hong You;Zhen-Hao Guo;Hai-Cheng Yi;Zhan-Heng Chen;Mei-Yuan Cao
19 Prediction of drug-target interactions by combining dual-tree complex wavelet transform with ensemble learning method 期刊论文 Jie Pan;Li-PingLi;Zhu-Hong You;Chang-QingYu;Zhong-Hao Ren;Yao Chen
20 Predicting protein-protein interactions based on ensemble learning-based model from protein sequence 期刊论文 Xinke Zhan;Mang Xiao;Zhu-Hong You;Chenggang Yan;Jianxin Guo;Liping Wang;Yaoqi Sun;Bingwan Shang
21 Prediction of Drug-Target Interactions by Ensemble Learning Method From Protein Sequence and Drug Fingerprint 期刊论文 Xinke Zhan;Zhu-Hong You;Jinfan Cai;Li-Ping Li;Changqing Yu;Jie Pan;Jiangkun Kong
22 MFIDMA: a multiple information integration model for the prediction of drug-miRNA associations 期刊论文 Yong-Jian Guan;Chang-Qing Yu;Yan Qiao;Li-Ping Li;Zhu-Hong You;Zhong-Hao Ren;Yue-Chao Li;Jie Pan
23 PPAEDTI: personalized propagation auto-encoder model for predicting drug-target interactions 期刊论文 Yue-Chao Li;Zhu-Hong You;Chang-Qing Yu;Lei Wang;Leon Wong;Lun Hu;Peng-Wei Hu;Yu-An Huang
24 A computational approach for predicting drug–target interactions from protein sequence and drug substructure fingerprint information 期刊论文 Yang Li;Xiao-Zhang Liu;Zhu-Hong You;Li-Ping Li;Jian-Xin Guo;Zheng Wang
25 SGCNCMI: A new model combining multi-modal information to predict circRNA-related miRNAs, diseases and genes 期刊论文 Chang-Qing Yu;Xin-Fei Wang;Li-Ping Li;Zhu-Hong You;Wen-Zhun Huang;Yue-Chao Li;Zhong-Hao Ren;Yong-Jian Guan
26 Robust and accurate prediction of protein-protein interactions by exploiting evolutionary information 期刊论文 Yang Li;Zheng Wang;Li-Ping Li;Zhu-Hong You;Wen-Zhun Huang;Xin-Ke Zhan;Yan-Bin Wang
27 An Efficient Approach based on Multi-sources Information to Predict CircRNA-disease Associations Using Deep Convoltional Neural Network 期刊论文 Lei Wang;Zhu-Hong You;Yu-An Huang;De-Shuang Huang;Keith C.C. Chan
28 CPIELA: Computational Prediction of Plant Protein-Protein Interactions by Ensemble Learning Approach From Protein Sequences and Evolutionary Information 期刊论文 Li-Ping Li;Bo Zhang;Li Cheng
29 DWPPI: A deep learning approach for predicting protein-protein interactions in plants based on multi-source information with a large-scale biological network 期刊论文 Jie Pan;Zhu-Hong You;Li-Ping Li;Wen-Zhun Huang;Jian-Xin Guo;Chang-Qing Yu;Li-Ping Wang;Zheng-Yang Zhao
30 Predicting Protein-Protein Interactions from Protein Sequence Information Using Dual-Tree Complex Wavelet Transform 会议论文 Jie Pan;Zhu-Hong You;Chang-Qing Yu;Li-Ping Li;Xin-ke Zhan
31 A novel ensemble learning-based computational method to predict protein-protein interactions from protein primary sequences 期刊论文 Jie Pan;Shiwei Wang;Changqing Yu;Liping Li;Zhu-Hong You;Yanmei Sun
32 A Unified Deep Biological Sequence Representation Learning with Pretrained Encoder-Decoder Model 会议论文 Hai-Cheng Yi;Zhu-Hong You;Xiao-Rui Su;De-Shuang Huang;Zhen-Hao Guo
33 Prediction of drug-target interactions from multi-molecular network based on LINE network representation method 期刊论文 Bo-Ya Ji;Zhu-Hong You;Han-Jing Jiang;Zhen-Hao Guo;Kai Zheng
34 Using Random Forest Model Combined With Gabor Feature to Predict Protein-Protein Interaction From Protein Sequence 期刊论文 Xin-Ke Zhan;Zhu-Hong You;Li-Ping Li;Yang Li;Zheng Wang;Jie Pan
35 A Gaussian Kernel Similarity-Based Linear Optimization Model for Predicting miRNA-lncRNA Interactions 会议论文 Leon Wong;Zhu-Hong You;Yu-An Huang;Xi Zhou;Mei-Yuan Cao
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