基于数据整合的计算癌症基因组学研究

61379092
2013
F0213.生物信息计算与数字健康
张世华
面上项目
研究员
中国科学院数学与系统科学研究院
77万元
生物信息学;计算生物学;数据整合;癌症基因组学;算法
2014-01-01到2017-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 Computational methods for subtyping of tumors and their applications for deciphering tumor heterogeneity 期刊论文 Shihua Zhang
2 Breast tumor subgroups reveal diverse clinical prognostic power 期刊论文 Zhaoqi Liu; Xiang-Sun Zhang; Shihua Zhang
3 Integrative cancer genomics: models, algorithms and analysis 期刊论文 Jinyu Chen;Shihua Zhang
4 Integrative analysis of transcription factor combinatorial interactions using a Bayesian tensor factorization approach 期刊论文 Yusen Ye;Lin Gao;Shihua Zhang
5 MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification 期刊论文 Wei Vivian Li;Anqi Zhao;Shihua Zhang;Jingyi Jessica Li
6 国家万人计划青年拔尖人才 奖励 张世华
7 Matrix factorization methods for integrative cancer genomics 期刊论文 Shihua Zhang; Xianghong Jasmine Zhou
8 Discovery of co-occurring driver pathways in cancer. 期刊论文 Junhua Zhang; Ling-Yun Wu; Xiang-Sun Zhang; Shihua Zhang
9 Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs 期刊论文 Junfei Zhao; Xiang-Sun Zhang; Shihua Zhang
10 High-dimensional genomic data bias correction and data integration using MANCIE 期刊论文 Chongzhi Zang;Tao Wang;Ke Deng;Bo Li;Sheng’en Hu;Qian Qin;Tengfei Xiao;Shihua Zhang;Clifford A. Meyer;Housheng Hansen He;Myles Brown;Jun S. Liu;Yang Xie;X. Shirley Liu
11 Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns 期刊论文 Xiaofei Yang;Lin Gao;Shihua Zhang
12 Towards a systematic understanding of cancers: a survey of the pan-cancer study. 期刊论文 Zhaoqi Liu; Shihua Zhang
13 IEEE/ACM Transactions on Computational Biology and Bioinformatics,Top Reviewer 奖励 张世华
14 A novel two-stage method for identifying miRNA-gene regulatory modules in breast cancer. 会议论文 Wenwen Min; Juan Liu; Fei Luo; Shihua Zhang
15 Identify multi-dimensional modules from diverse cancer genomics data. 专著 Shihua Zhang; Wenyuan Li; Xianghong Jasmine Zhou
16 国家自然科学基金优秀青年基金 奖励 张世华
17 Comparison of computational methods for imputing single-cell RNA-sequencing data 期刊论文 Lihua Zhang;Shihua Zhang
18 An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文 Jianbo Lu; Guoliang Xu; Shihua Zhang; Benzhuo Lu
19 教育部自然科学奖二等奖 奖励 赵兴明;陈洛南;张世华;等
20 High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method 期刊论文 Li Wenyuan; Kang Shuli; Liu Chun-Chi; Zhang Shihua; Shi Yi; Liu Yan; Zhou Xianghong Jasmine
21 Over-expression of EPS15 is a favorable prognostic factor in breast cancer 期刊论文 Xiaofeng Dai; Zhaoqi Liu; Shihua Zhang
22 Discovery of cancer common and specific driver gene sets 期刊论文 Junhua Zhang;Shihua Zhang
23 Sparse Weighted Canonical Correlation Analysis 期刊论文 Wenwen Min;Juan Liu;Shihua Zhang
24 Profiling the transcription factor regulatory networks of human cell types 期刊论文 Shihua Zhang; Dechao Tian; Ngoc Hieu Tran; Kwok Pui Choi; Louxin Zhang
25 An integrative and comparative study of pan-cancer transcriptomes reveals distinct cancer common and specific signatures. 期刊论文 Zhen Cao;Shihua Zhang
26 Quantitative function and algorithm for community detection in bipartite networks 期刊论文 Zhenping Li;Rui-Sheng Wang;Shihua Zhang;Xiang-Sun Zhang
27 Large-scale determination and characterization of cell type-specific regulatory elements in the human genome 期刊论文 Can Wang;Shihua Zhang
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