水稻全基因组DNA G4位点鉴定及其调控基因表达的表观遗传学机理研究
32070561
2020
C0603.表观遗传调控
张文利
面上项目
教授
南京农业大学
58万元
基因表达;水稻;DNA G四联体;表观调控;作物
2021-01-01到2024-12-31
- 中英文摘要
- 结题摘要
- 结题报告
- 项目成果
- 项目参与人
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| 序号 | 标题 | 类型 | 作者 |
|---|---|---|---|
| 1 | Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements | 期刊论文 | Zhang Yuyun;Li Zijuan;Zhang Yu'e;Lin Kande;Peng Yuan;Ye Luhuan;Zhuang Yili;Wang Meiyue;Xie Yilin;Guo Jingyu;Teng Wan;Tong Yiping;Zhang Wenli;Xue Yongbiao;Lang Zhaobo;Zhang Yijing |
| 2 | 一种在植物正常生理条件下鉴定全基因组DNA鸟嘌呤四联体位点的方法 | 专利 | 张文利;田瑞平;史依宁;冯逸龙;罗振宇;马星;杨莹;韩琪 |
| 3 | 一种用于快速鉴定小麦族开花期及春冬习性相关生态型的DNA序列及应用 | 专利 | 张文利;郑东洋;史依宁;林堪德;程雪姣;杨莹;韩琪 |
| 4 | The Epigenomic Features and Potential Functions of PEG- and PDS-Favorable DNA G-Quadruplexes in Rice | 期刊论文 | Ranran Huang;Yilong Feng;Zhicheng Gao;Asgar Ahmed;Wenli Zhang |
| 5 | Identification of key transcription factors related to bacterial spot resistance in pepper through regulatory network analyses | 期刊论文 | Zhu Qingquan;Gao Shenghua;Zhang Wenli |
| 6 | Characterization of transposon-derived accessible chromatin regions in rice (Oryza Sativa) | 期刊论文 | Zhang Aicen;Zhang Wenli |
| 7 | Identification and functional characterization of i-motifs in plants | 期刊论文 | Zhao Pengtao;Feng Yilong;Jiang Peng;Zhang Wenli |
| 8 | 水稻三种非B型DNA二级结构的鉴定及功能分析 | 专著 | 张文利;冯逸龙;马星;李梦琪;陶申童;程雪姣 |
| 9 | Single-cell transcriptome and network analyses unveil key transcription factors regulating mesophyll cell development in maize | 期刊论文 | Tao Shentong;Liu Peng;Shi Yining;Feng Yilong;Gao Jingjing;Chen Lifen;Zhang Aicen;Cheng Xuejiao;Wei Hairong;Zhang Tao;Zhang Wenli |
| 10 | 一种在全基因组水平鉴定植物基因组DNA胞嘧啶四联体位点的方法 | 专利 | 张文利;冯逸龙;马星;史依宁;杨莹;程雪姣 |
| 11 | Transcriptome-based gene regulatory network analyses of differential cold tolerance of two tobacco cultivars | 期刊论文 | Luo Zhenyu;Zhou Zhicheng;Li Yangyang;Tao Shentong;Hu Zhengrong;Yang Jiashuo;Cheng Xuejiao;Hu Risheng;Zhang Wenli |
| 12 | Epigenomic features and potential functions of K+ and Na+ favorable DNA G-quadruplexes in rice | 期刊论文 | Feng Yilong;Luo Zhenyu;Huang Ranran;Yang Xueming;Cheng Xuejiao;Zhang Wenli |
| 13 | Transcriptomic analyses reveal carbon dots-based seed priming in the regulation of root growth in rice | 期刊论文 | Zhang Yang;Zhang Aicen;Jing Jiaxin;Li Zhiqi;Ahmed Asgar;Shi Yining;Huang Jian;Zhang Wenli |
| 14 | Identification and functional characterization of G-quadruplexes in plants | 期刊论文 | Ma Xing;Feng Yilong;Luo Zhenyu;Zhang Wenli |
| 15 | Genome-wide identification of open chromatin in plants using MH-seq | 专著 | Zhang Aicen;Li Xinxu;Zhao Hainan;Jiang Jiming;Zhang Wenli |
| 16 | The roles of DNA methylation on pH dependent i-motif (iM) formation in rice | 期刊论文 | Feng Yilong;Ma Xing;Yang Ying;Tao Shentong;Ahmed Asgar;Gong Zhiyun;Cheng Xuejiao;Zhang Wenli |
| 17 | R-loops: emerging key regulators in plants | 期刊论文 | Zheng Dongyang;Li Mengqi;Yang Ying;Huang Ranran;Zhang Wenli |
| 18 | Side-by-side comparison of G-quadruplex (G4) capture efficiency of the antibody BG4 versus the small-molecule ligands TASQs | 期刊论文 | Feng Yilong;He ZeXue;Luo Zhenyu;Sperti Francesco Rota;Valverde Ibai E;Zhang Wenli;Monchaud David |
| 19 | Profiling of H3K4me3 and H3K27me3 and their roles in gene subfunctionalization in allotetraploid cotton | 期刊论文 | Zhang Aicen;Wei Yangyang;Shi Yining;Deng Xiaojuan;Gao Jingjing;Feng Yilong;Zheng Dongyang;Cheng Xuejiao;Li Zhaoguo;Wang Tao;Wang Kunbo;Liu Fang;Peng Renhai;Zhang Wenli |
| 20 | Low-input single-cell based chromatin profiling in plants | 期刊论文 | Zhang Aicen;Peng Yulian;Wu Jing;Zhang Wenli |
| 21 | Transcriptomic and metabolic regulatory network characterization of drought responses in tobacco | 期刊论文 | Hu Zhengrong;He Zexue;Li Yangyang;Wang Qing;Yi Pengfei;Yang Jiashuo;Yang Chenkai;Borovskii Gennadii;Cheng Xuejiao;Hu Risheng;Zhang Wenli |
| 22 | i-Motif DNA: identification, formation, and cellular functions | 期刊论文 | Tao Shentong;Run Yonghang;Monchaud David;Zhang Wenli |
| 23 | Network and epigenetic characterization of subsets of genes specifically expressed in maize bundle sheath cells | 期刊论文 | Tao Shentong;Zhang Wenli |
| 24 | Genome-wide characterization of i-motifs and their potential roles in the stability and evolution of transposable elements in rice | 期刊论文 | Ma Xing;Feng Yilong;Yang Ying;Li Xin;Shi Yining;Tao Shentong;Cheng Xuejiao;Huang Jian;Wang Xiu-E;Chen Caiyan;Monchaud David;Zhang Wenli |
| 25 | Genomic variations combined with epigenetic modifications rewire open chromatin in rice | 期刊论文 | Mengqi Li;Yilong Feng;Qi Han;Ying Yang;Yining Shi;Dongyang Zheng;Wenli Zhang |
| 26 | Genome-wide characterization of single-stranded DNA in rice | 期刊论文 | Peng Yulian;Zhao Pengtao;Li Zhaoguo;Mu Ning;Tao Shentong;Feng Yilong;Cheng Xuejiao;Zhang Wenli |
| 27 | Epigenomic features of DNA G-quadruplexes and their roles in regulating rice gene transcription | 期刊论文 | Feng Yilong;Tao Shentong;Zhang Pengyue;Sperti Francesco Rota;Liu Guanqing;Cheng Xuejiao;Zhang Tao;Yu Hengxiu;Wang Xiu-E;Chen Caiyan;Monchaud David;Zhang Wenli |
| 28 | Omics studies of DNA G-/C-quadruplexes in plants | 期刊论文 | Li Mengqi;Tian Ruiping;Monchaud David;Zhang Wenli |
| 29 | Genome-wide characterization of fragile and resistant nucleosomes in response to cold stress in maize | 期刊论文 | Huang Ranran;Zhu Qingquan;Tao Shentong;Gao Jingjing;Shi Yining;Feng Yilong;Ahmed Asgar;Zhang Wenli;Cheng Xuejiao |
| 30 | Interplay of DNA and RNA N6-methyladenine with R-loops in regulating gene transcription in Arabidopsis | 期刊论文 | Zhang Pengyue;Gao Jingjing;Li Xinxu;Feng Yilong;Shi Manli;Shi Yining;Zhang Wenli |
| 31 | R-loops act as regulatory switches modulating transcription of COLD-responsive genes in rice | 期刊论文 | He Zexue;Li Mengqi;Pan Xiucai;Peng Yulian;Shi Yining;Han Qi;Shi Manli;She Linwei;Borovskii Gennadii;Chen Xiaojun;Gu Xiaofeng;Cheng Xuejiao;Zhang Wenli |
| 32 | Low cell number ChIP‐seq reveals chromatin state‐based regulation of gene transcription in the rice male meiocytes | 期刊论文 | Zhang Aicen;You Hanli;Cao Lei;Shi Yining;Chen Jiawei;Shen Yi;Tao Shentong;Cheng Zhukuan;Zhang Wenli |
| 33 | Toward an understanding of the detection and function of R-loops in plants | 期刊论文 | Gao Jingjing;Zhang Pengyue;Li Xinxu;Wu Wenqi;Wei Hairong;Zhang Wenli |
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