预测未知的潜在病毒基因序列的研究与传染病预测平台

91746119
2017
C0609.生物大数据解析
丘成栋
重大研究计划
教授
清华大学
60万元
未知病毒预测;自然向量法;新基因序列;传染病预防
2018-01-01到2020-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 Toward a high-quality pan-genome landscape of Bacillus subtilis by removal of confounding strains. 期刊论文 Wu Hao;Wang Dan;Gao Feng
2 Fast and accurate genome comparison using genome images: The Extended Natural Vector Method 期刊论文 Shaojun Pei;Wenhui Dong;Xiuqiong Chen;Rong Lucy He;Stephen S.-T. Yau
3 Frontier Expansion Sampling: A Method to Accelerate Conformational Search by Identifying Novel Seed Structures for Restart. 期刊论文 Zhang Juanrong;Gong Haipeng
4 A novel alignment-free method for HIV-1 subtype classification 期刊论文 Lily He;Rui Dong;Rong Lucy He;Stephen S.-T. Yau
5 Recombinational DSBs-intersected genes converge on specific disease- and adaptability-related pathways 期刊论文 Yang Zhi Kai;Luo Hao;Zhang Yanming;Wang Baijing;Gao Feng
6 Ori-Finder 3: a web server for genome-wide prediction of replication origins in Saccharomyces cerevisiae. 期刊论文 Wang Dan;Lai Fei-Liao;Gao Feng
7 A New Method Based on Coding Sequence Density to Cluster Bacteria. 期刊论文 Sun Nan;Dong Rui;Pei Shaojun;Yin Changchuan;Yau Stephen S-T
8 A new efficient method for analyzing fungi species using correlations between nucleotides. 期刊论文 Zhao Xin;Tian Kun;Yau Stephen S-T
9 Inverted repeats in coronavirus SARS-CoV-2 genome and implications in evolution 期刊论文 Changchuan Yin;Stephen S.-T. Yau
10 Convex hull principle for classification and phylogeny of eukaryotic proteins 期刊论文 Xin Zhao;Kun Tian;Rong L. He;Stephen S.-T. Yau
11 Convex hull analysis of evolutionary and phylogenetic relationships between biological groups 期刊论文 Kun Tian;Xin Zhao;Stephen S T Yau
12 Positional Correlation Natural Vector: A Novel Method for Genome Comparison. 期刊论文 He Lily;Dong Rui;He Rong Lucy;Yau Stephen S-T
13 RDb(2)C2: an improved method to identify the residue-residue pairing in β strands. 期刊论文 Shao Di;Mao Wenzhi;Xing Yaoguang;Gong Haipeng
14 A new method to cluster genomes based on cumulative Fourier power spectrum 期刊论文 Dong Rui;Zhu Ziyue;Yin Changchuan;He Rong L;Yau Stephen S T
15 Phylogenetic analysis of protein sequences based on a novel k-mer natural vector method 期刊论文 Zhang YuYan;Wen Jia;Yau Stephen S-T
16 Improved fragment sampling for ab initio protein structure prediction using deep neural networks 期刊论文 Wang Tong;Qiao Yanhua;Ding Wenze;Mao Wenzhi;Zhou Yaoqi;Gong Haipeng
17 A systematic strategy for the investigation of vaccines and drugs targeting bacteria 期刊论文 Fangfang Yan;Feng Gao
18 Large-Scale Genome Comparison Based on Cumulative Fourier Power and Phase Spectra: Central Moment and Covariance Vector 期刊论文 Shaojun Pei;Rui Dong;Rong Lucy He;Stephen S.-T. Yau
19 Pan-genomic analysis provides novel insights into the association of E.coli with human host and its minimal genome 期刊论文 Yang Zhi-Kai;Luo Hao;Zhang Yanming;Wang Baijing;Gao Feng
20 DeepConPred2: An Improved Method for the Prediction of Protein Residue Contacts. 期刊论文 Ding Wenze;Mao Wenzhi;Shao Di;Zhang Wenxuan;Gong Haipeng
21 Classification of genomic components and prediction of genes of Begomovirus based on subsequence natural vector and support vector machine. 期刊论文 Pei Shaojun;Dong Rui;Bao Yiming;He Rong Lucy;Yau Stephen S-T
22 Splice sites detection using chaos game representation and neural network 期刊论文 Tung Hoang;Changchuan Yin;Stephen S.-T. Yau
23 New Genome Sequence Detection via Natural Vector Convex Hull Method. 期刊论文 Zhao Ruzhang;Pei Shaojun;Yau Stephen Shing Toung
24 Assessment of kmer degeneration method for complicated genomes 期刊论文 Shuai Liu;Shaojun Pei;Qi Wu;Stephen S.-T. Yau
25 A whole-genome association approach for large-scale interspecies traits 期刊论文 Huizhong Fan;Lei Chen;Yibo Hu;Guohui Shi;Yi Dai;Fuwen Wei;Qi Wu
26 Predicting the Real-Valued Inter-Residue Distances for Proteins. 期刊论文 Ding Wenze;Gong Haipeng
27 Protein Sequence Classification Using Natural Vector and Convex Hull Method. 期刊论文 Wang Yi;Tian Kun;Yau Stephen S-T
28 Virus classification based on Q-vectors 期刊论文 Hui Zheng;Jie Yang;Rong L. He;Stephen S.-T. Yau
29 DoriC 10.0: an updated database of replication origins in prokaryotic genomes including chromosomes and plasmids 期刊论文 Luo Hao;Gao Feng
30 Quantitative analysis and assessment of base composition asymmetry and gene orientation bias in bacterial genomes 期刊论文 Quan Chun-Lan;Gao Feng
31 Comparing protein structures and inferring functions with a novel three-dimensional Yau-Hausdorff method. 期刊论文 Tian Kun;Zhao Xin;Zhang Yuning;Yau Stephen
32 A novel numerical representation for proteins: Three-dimensional Chaos Game Representation and its Extended Natural Vector 期刊论文 Zeju Sun;Shaojun Pei;Rong Lucy He;Stephen S.-T. Yau
33 Analysis of the Hosts and Transmission Paths of SARS-CoV-2 in the COVID-19 Outbreak. 期刊论文 Dong Rui;Pei Shaojun;Yin Changchuan;He Rong Lucy;Yau Stephen S-T
34 AmoebaContact and GDFold as a pipeline for rapid de novo protein structure prediction 期刊论文 Mao Wenzhi;Ding Wenze;Xing Yaoguang;Gong Haipeng
35 Comprehensive Analysis of Replication Origins in Saccharomyces cerevisiae Genomes 期刊论文 Wang Dan;Gao Feng
36 Amino acid torsion angles enable prediction of protein fold classification. 期刊论文 Tian Kun;Zhao Xin;Wan Xiaogeng;Yau Stephen S-T
37 A New Alignment-Free Whole Metagenome Comparison Tool and Its Application on Gut Microbiomes of Wild Giant Pandas. 期刊论文 Dong Jiuhong;Liu Shuai;Zhang Yaran;Dai Yi;Wu Qi
38 A Novel Approach to Clustering Genome Sequences Using Inter-nucleotide Covariance. 期刊论文 Dong Rui;He Lily;He Rong Lucy;Yau Stephen S-T
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