基于机器学习的蛋白质相互作用与功能预测方法研究

61133010
2011
F0213.生物信息计算与数字健康
黄德双
重点项目
教授
同济大学
280万元
蛋白质相互作用;图半监督学习;流形学习与线图;机器学习;功能预测
2012-01-01到2016-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks 期刊论文 Su-Ping Deng|Lin Zhu|De-Shuang Huang|
2 Classification of Protein Structure Classes on Flexible Neutral Tree 期刊论文 Bao Wen Zheng|Wang Dong|Chen Yue Hui|
3 ChIP-PIT Enhancing the Analysis of ChIP-Seq Data Using Convex-Relaxed Pair-Wise Interaction Tensor Decomposition 期刊论文 Deng Su Ping|Deng Su Ping|Huang De Shuang|Huang De Shuang|
4 Understanding tissue-specificity with human tissue-specific regulatory networks 期刊论文 Zhao Xing Ming|Zhao Xing Ming|Huang De Shuang|Huang De Shuang|
5 Implementation of Plant Leaf Recognition System on ARM Tablet Based on Local Ternary Pattern 会议论文 Xiao-Ping Zhang|Xiao-Ping Zhang|Li Shang|Li Shang|
6 Protein-protein interaction affinity prediction based on interface descriptors and machine learning 会议论文 Zhu Min|Li Xiao-Lai|Wang Hong-Qiang|Wang Shulin|
7 Sequence-Based Prediction of Protein-Protein Interactions Using RandomTree and GA 会议论文 黄德双|
8 Fluorescent Nanoparticle Beacon for Logic Gate Operation Regulated by Strand Displacement 期刊论文 Schlaberg, H. Inaki|Liu, Shi|Xu, Jin|Zhang, Cheng|
9 Plant leaf recognition using histograms of oriented gradients 会议论文 Xia, Qing|Zhu, Hao-Dong|Gan, Yong|Shang, Li|
10 Nanoparticle aggregation logic computing controlled by DNA branch migration 期刊论文 Yang, Jing|Schlaberg, H. Inaki|Liu, Shi|Xu, Jin|
11 Optimized projections for sparse representation based classification 期刊论文 Lu, Can-Yi|Huang, De-Shuang|
12 Analysis of MicroRNA and transcription factor regulation 会议论文 Han, Kyungsook|Han, Kyungsook|Huang, De-Shuang|Huang, De-Shuang|
13 An integrated multi-scale mechanistic model for cancer drug therapy 期刊论文 黄德双|
14 Prediction of lysine acetylation sites based on neural network 会议论文 Han, Kyungsook|Han, Kyungsook|Huang, De-Shuang|Huang, De-Shuang|
15 Efficient optimally regularized discriminant analysis 期刊论文 Zhu, Lin|Huang, De-Shuang|
16 Robust and efficient subspace segmentation via least squares regression 会议论文 Zhao Zhong-Qiu|Zhu Lin|Huang De-Shuang|Yan Shuicheng|
17 A molecular cryptography model based on structures of DNA self-assembly 期刊论文 Jing Yang|Jingjing Ma|Shi Liu|Cheng Zhang|
18 Face recognition via Weighted Sparse Representation 期刊论文 Min, Hai|Gui, Jie|Zhu, Lin|Lei, Ying-Ke|
19 Understanding tissue-specificity with human tissue-specific regulatory networks 期刊论文 Zhao Xing Ming|Zhao Xing Ming|Huang De Shuang|Huang De Shuang|
20 Descriptors for DNA sequences based on joint diagonalization of their feature matrices from dinucleotide physicochemical properties 期刊论文 Hong-Jie Yu|De-Shuang Huang|
21 Normalized feature vectors : A Novel Alignment - Free Sequence Comparison Method Based on Numbers of Adjacent Amino Acids . 期刊论文 DS Huang|HJ Yu|
22 ChIP-PIT Enhancing the Analysis of ChIP-Seq Data Using Convex-Relaxed Pair-Wise Interaction Tensor Decomposition 期刊论文 Deng Su Ping|Deng Su Ping|Huang De Shuang|Huang De Shuang|
23 Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks 期刊论文 Zhu Lin|Zhu Lin|Huang De Shuang|Huang De Shuang|
24 A new local binary pattern in texture classification 会议论文 Wei, Haibin|Zhu, Hao-Dong|Gan, Yong|Shang, Li|
25 Enhanced local ternary pattern for texture classification 会议论文 Yuan, Jing-Hua|Zhu, Hao-Dong|Gan, Yong|Shang, Li|
26 Protein molecular function prediction based on the phylogenetic tree 会议论文 Lu Jian|
27 Nonconvex Penalty Based Low-rank Representation and Sparse Regression for eQTLMapping 期刊论文 Guo Wei Li|Guo Wei Li|Huang De Shuang|Huang De Shuang|
28 Plant Leaf Recognition Based on Contourlet Transform and Support Vector Machine 会议论文 Hao-Dong Zhu|Hao-Dong Zhu|Yong Gan|Yong Gan|
29 Extract features using stacked denoised autoencoder 会议论文 Zhu, Lin|Zhu, Hao-Dong|Gan, Yong|Shang, Li|
30 Segmented K-mer and its application on similarity analysis of mitochondrial genome sequences 期刊论文 Yu, Hong-Jie|
31 Collaborative Completion of Transcription Factor Binding Profiles via Local Sensitive Unified Embedding 期刊论文 Canyi Lu|Lu Canyi|De-Shuang Huang|Huang De-Shuang|
32 Prediction of lysine acetylation sites based on neural network 会议论文 Han, Kyungsook|Han, Kyungsook|Huang, De-Shuang|Huang, De-Shuang|
33 Prediction of peptide drift time in ion mobility mass spectrometry from sequence-based features 期刊论文 Chen, Peng|Ji, Zhiwei|Deng, Shuping|Li, Chi|
34 Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks 期刊论文 Zhu Lin|Zhu Lin|Huang De Shuang|Huang De Shuang|
35 Binding Assistance Triggering Attachments of Hairpin DNA onto Gold Nanoparticles. 期刊论文 Ma, Jingjing|Yang, Jing|Liu, Shi|Xu, Jin|
36 Optimized projections for sparse representation based classification 期刊论文 Lu, Can-Yi|Huang, De-Shuang|
37 DiscMLA: An Efficient Discriminative Motif Learning Algorithm over High-Throughput Datasets 期刊论文 Zhu Lin|Zhu Lin|Huang De Shuang|Huang De Shuang|
38 Control of gold nanoparticles based on circular DNA strand displacement 期刊论文 Ma, Jingjing|Yang, Jing|Dong, Yafei|Xu, Jin|
39 Large-scale protein-protein interactions detection by integrating big biosensing data with computational model. 期刊论文 Li, Shuai|Gao, Xin|Luo, Xin|Ji, Zhen|
40 SFAPS: An R package for structure/function analysis of protein sequences based on informational spectrum method 期刊论文 Deng, Su-Ping|Huang, De-Shuang|
41 Hybrid Deep Learning for Plant Leaves 会议论文 Zhi-Kai Huang|Zhi-Kai Huang|Yong Gan|Yong Gan|
42 自组装DNA链置换分子逻辑计算模型 期刊论文 马丽娜|董亚非|杨静|许进|
43 Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis 期刊论文 Lei, Ying-Ke|Zhu, Lin|Xia, Junfeng|Wang, Bing|
44 Finding minimum gene subsets with heuristic breadth-first search algorithm for robust tumor classification 期刊论文 Wang, Shu-Lin|Li, Xue-Ling|Fang, Jianwen|
45 LSE: A Novel Robust Geometric Approach for Modeling Protein-Protein Interaction Networks 期刊论文 Zhu, Lin|You, Zhu-Hong|Huang, De-Shuang|Wang, Bing|
46 A molecular logical switching beacon controlled by thiolated DNA signals 期刊论文 Wu, Liuqing|Yang, Jing|Liu, Shi|Xu, Jin|
47 t - LSE : A Novel Robust Geometric Approach for Modeling Protein - Protein Interaction Networks 期刊论文 L Zhu|ZH You|DS Huang|B Wang|
48 Nonconvex Penalty Based Low-rank Representation and Sparse Regression for eQTLMapping 期刊论文 Guo Wei Li|Guo Wei Li|Huang De Shuang|Huang De Shuang|
49 Collaborative Completion of Transcription Factor Binding Profiles via Local Sensitive Unified Embedding 期刊论文 Canyi Lu|Lu Canyi|De-Shuang Huang|Huang De-Shuang|
50 Graphical Representation for DNA Sequences via Joint Diagonalization of Matrix Pencil 期刊论文 Yu, Hong-Jie|Huang, De-Shuang|
51 A Two-Stage Geometric Method for Pruning Unreliable Links in Protein-Protein Networks 期刊论文 Z. Lin, D. Su-Ping,|Z. Lin, D. Su-Ping,|H. De-Shuang|H. De-Shuang|
52 Efficient optimally regularized discriminant analysis 期刊论文 Zhu, Lin|Huang, De-Shuang|
53 Random Walk-Based Solution to Triple Level Stochastic Point Location Problem 期刊论文 Jiang Wen|Huang De Shuang|Li Sheng Hong|
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