自组装的理论与模拟

91027044
2010
B0301.化学理论与方法
徐昕
重大研究计划
教授
复旦大学
280万元
自组装;分子力学;密度泛函;统计力学;弱键相互作用
2011-01-01到2014-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 Perturbative Treatment of Anharmonic Vibrational Effects on Bond Distances: An Extended Langevin Dynamics Method 期刊论文 Shen, Tonghao|Su, Neil Qiang|Wu, Anan|Xu, Xin|
2 Counterion Effects on the Denaturing Activity of Guanidinium Cation to Protein 期刊论文 Shao, Qiang|Fan, Yubo|Yang, Lijiang|Gao, Yi Qin|
3 How To Prepare a Chiral Grignard Reagent: A Theoretical Proposal 期刊论文 Chen, Zhe-Ning|Fu, Gang|Xu, Xin|
4 A new insight into the initial step in the Fischer-Tropsch synthesis: CO dissociation on Ru surfaces 期刊论文 Li, Hongping|Fu, Gang|Xu, Xin|
5 Fractional charge behaviour and band gap predictions with the XYG3 type of doubly hybrid density functionals 会议论文 徐昕|
6 Towards Direct-Gap Silicon Phases by the Inverse Band Structure Design Approach 期刊论文 Xiang, H. J.|Huang, Bing|Kan, Erjun|Wei, Su-Huai|Gong, X. G.|
7 Fractional charge behaviour and band gap predictions with the XYG3 type of doubly hybrid density functionals 会议论文 徐昕|
8 多参数相关密度泛函方法计算核磁共振屏蔽常数与化学位移 会议论文 孙萌|吴安安|徐昕|
9 Water plays an important role in osmolyte-induced hairpin structure change: A molecular dynamics simulation study 期刊论文 Shao, Qiang|Gao, Yi Qin|
10 XYG3 型双杂化密度泛函方法新进展:从能量到能量的解析梯度 期刊论文 苏乃强|徐昕|
11 Differences of Cations and Anions: Their Hydration, Surface Adsorption, and Impact on Water Dynamics 期刊论文 Yang, Lijiang|Fan, Yubo|Gao, Yi Qin|
12 Enhanced Sampling Method in Molecular Simulations 期刊论文 Yang Lijiang|Shao Qiang|Gao Yiqin|
13 Unified model of ferroelectricity induced by spin order 期刊论文 Xiang, H. J.|Wang, P. S.|Whangbo, M. -H.|Gong, X. G.|
14 Single-Molecule Detection Reveals Knot Sliding in TrmD Denaturation 期刊论文 Wang, Peng|Yang, Lijiang|Liu, Pengcheng|Gao, Yi Qin|Zhao, Xin Sheng|
15 Metal complexes as templates: syntheses, structures, and luminescent properties of two zinc phosphonocarboxylates with ABW-zeolite topology 期刊论文 Chen, Zhenxia|Yang, Haiyang|Deng, Mingli|Ling, Yun|Weng, Linhong|Zhou, Yaming|
16 Pairing preferences of the model mono-valence mono-atomic ions investigated by molecular simulation 期刊论文 Zhang, Qiang|Zhang, Ruiting|Zhao, Ying|Li, HuanHuan|Gao, Yi Qin|Zhuang, Wei|
17 Construction of a parameter-free doubly hybrid density functional from adiabatic connection 期刊论文 Su, Neil Qiang|Xu, Xin|
18 Two Novel Zinc(II) Metal-Organic Frameworks Based on Triazole-Carboxylate Shared Paddle-Wheel Units: Synthesis, Structure, and Gas Adsorption 期刊论文 Ling, Yun|Chen, Zhenxia|Zheng, Hua|Zhou, Yaming|Weng, Linhong|Zhao, Dongyuan|
19 新一代密度泛函方法XYG3 期刊论文 张颖|徐昕|
20 Stable Salt-Water Cluster Structures Reflect the Delicate Competition between Ion-Water and Water-Water Interactions 期刊论文 Liu, Cheng-Wen|Wang, Feng|Yang, Lijiang|Li, Xin-Zheng|Zheng, Wei-Jun|Gao, Yi Qin|
21 Analytic derivatives for the XYG3 type of doubly hybrid density functionals: Theory, implementation, and assessment 期刊论文 Su, Neil Qiang|Zhang, Igor Ying|Xu, Xin|
22 Solvothermal in situ synthesis of cyanide-containing ternary silver(I) coordination polymers and their phosphorescent properties 期刊论文 Ling, Yun|Zhai, Fu-Peng|Deng, Ming-Li|Wu, Dong|Chen, Zhen-Xia|Liu, Xiao-Feng|Zhou, Ya-Ming|Weng, Lin-Hong|
23 Proton-Induced Dysfunction Mechanism of Cathodes in an Aqueous Lithium Ion Battery 期刊论文 Shu, Qiang|Chen, Long|Xia, Yongyao|Gong, Xingao|Gu, Xiao|
24 Direct Observation of the Uptake of Outer Membrane Proteins by the Periplasmic Chaperone Skp 期刊论文 Lyu, Zhi-Xin|Shao, Qiang|Gao, Yi Qin|Zhao, Xin Sheng|
25 新一代密度泛函方法XYG3 会议论文 徐昕|
26 A fast doubly hybrid density functional method close to chemical accuracy using a local opposite spin ansatz 期刊论文 Zhang, Igor Ying|Xu, Xin|Jung, Yousung|Goddard, William A., III|
27 A Simple Theory for the Hofmeister Series 期刊论文 Xie, Wen Jun|Gao, Yi Qin|
28 How well can we do computational heterogeneous catalysis? A caveat 会议论文 Xu, Xin|
29 A New-Generation Density Functional -- Towards Chemical Accuracy for Chemistry of Main Group Elements, <b>SpringerBriefs in Molecular Science</b> 专著 Igor Ying Zhang|Xin Xu|
30 Gas-Phase Thermodynamics as a Validation of Computational Catalysis on Surfaces: A Case Study of Fischer-Tropsch Synthesis 期刊论文 Zhang, Igor Ying|Xu, Xin|
31 Prediction of a multiferroic state with large electric polarization in tensile-strained TbMnO3 期刊论文 Hou, Y. S.|Yang, J. H.|Gong, X. G.|Xiang, H. J.|
32 新一代密度泛函方法XYG3 期刊论文 张颖|徐昕|
33 Enhancing CO2 adsorption of a Zn-phosphonocarboxylate framework by pore space partitions 期刊论文 Ling, Yun|Deng, Mingli|Chen, Zhenxia|Xia, Bing|Liu, Xiaofeng|Yang, Yongtai|Zhou, Yaming|Weng, Linhong|
34 DCMB that Combines Divide-and-Conquer and Mixed-Basis Set Methods for Accurate Geometry Optimizations, Total Energies, and Vibrational Frequencies of Large Molecules 期刊论文 Wu, Anan|Xu, Xin|
35 Crystal transformation synthesis of a highly stable phosphonate MOF for selective adsorption of CO2 期刊论文 Zhai, Fupeng|Zheng, Qingshu|Chen, Zhenxia|Ling, Yun|Liu, Xiaofeng|Weng, Linhong|Zhou, Yaming|
36 How well can we do computational heterogeneous catalysis ? - A Caveat ! 会议论文 徐昕|
37 Computer Simulation Studies of Aβ37–42 Aggregation Thermodynamics and Kinetics in Water and Salt Solution 期刊论文 Yang, Y. Isaac, Gao, Yi Qin|
38 A flexible porous metal-azolate framework constructed by [Cu-3(mu(3)-OH)(mu(2)-O)(triazolate)(2)](+) building blocks: synthesis, reversible structural transformation and related magnetic properties 期刊论文 Xia, Bing|Chen, Zhenxia|Zheng, Qingshu|Zheng, Hua|Deng, Mingli|Ling, Yun|Weng, Linhong|Zhou, Yaming|
39 Assessment of Some Density Functional Theory Methods and Force Field Models in Describing Various Interaction Modes of Benzene Dimer 期刊论文 Zhou, Yu-wei|Zhang, Igor Ying|Wu, Jian-ming|Wu, An-an|Xu, Xin|
40 Development of New Density Functionals: Towards Accurate Descriptions of Potential Energy Surfaces 会议论文 徐昕|
41 Reaching a Uniform Accuracy for Complex Molecular Systems: Long-Range-Corrected XYG3 Doubly Hybrid Density Functional 期刊论文 Zhang, Igor Ying|Xu, Xin|
42 Magnetic properties and energy-mapping analysis 期刊论文 Xiang, Hongjun|Lee, Changhoon|Koo, Hyun-Joo|Gong, Xingao|Whangbo, Myung-Hwan|
43 XO: An extended ONIOM method for accurate and efficient modeling of large systems 期刊论文 Guo, Wenping|Wu, Anan|Zhang, Igor Ying|Xu, Xin|
44 Oxidation Mechanism of Si(111)-7 x 7 by Water: A Theoretical Study 期刊论文 Wang, Xinlan|Duan, Sai|Xu, Xin|
45 Origin of the superior conductivity of perovskite Ba(Sr)SnO3 期刊论文 Liu, Heng-Rui|Yang, Ji-Hui|Xiang, H. J.|Gong, X. G.|Wei, Su-Huai|
46 Nonfitting protein-ligand interaction scoring function based on first-principles theoretical chemistry methods: Development and application on kinase inhibitors 期刊论文 Rao, Li|Zhang, Igor Ying|Guo, Wenping|Feng, Li|Meggers, Eric|Xu, Xin|
47 Adsorption of water molecules on sodium chloride trimer 期刊论文 Liu, Cheng-Wen|Hou, Gao-Lei|Zheng, Wei-Jun|Gao, Yi Qin|
48 Simple Theory for Salt Effects on the Solubility of Amide 期刊论文 Gao, Yi Qin|
49 Error Accumulations in Adhesive Energies of Dihydrogen Molecular Chains: Performances of the XYG3 Type of Doubly Hybrid Density Functionals 期刊论文 Neil Qiang Su|Xin Xu|
50 Fractional charge behaviour and band gap predictions with the XYG3 type of doubly hybrid density functionals 会议论文 徐昕|
51 Accurate prediction of nuclear magnetic resonance shielding constants: Towards the accuracy of CCSD(T) complete basis set limit 期刊论文 Sun, Meng|Zhang, Igor Ying|Wu, Anan|Xu, Xin|
52 Density functional theory study on the adsorption and decomposition of the formic acid catalyzed by highly active mushroom-like Au@Pd@Pt tri-metallic nanoparticles 期刊论文 Duan, Sai|Ji, Yong-Fei|Fang, Ping-Ping|Chen, Yan-Xia|Xu, Xin|Luo, Yi|Tian, Zhong-Qun|
53 Thermal effects on electronic properties of CO/Pt(111) in water 期刊论文 Duan, Sai|Xu, Xin|Luo, Yi|Hermansson, Kersti|Tian, Zhong-Qun|
54 A comparison of geometric parameters from PBE-based doubly hybrid density functionals PBE0-DH, PBE0-2, and xDH-PBE0 期刊论文 Su, Neil Qiang|Adamo, Carlo|Xu, Xin|
55 XYG3 and XYGJ-OS performances for noncovalent binding energies relevant to biomolecular structures 期刊论文 Zhang, Igor Ying|Xu, Xin|
56 Analytic derivatives for the XYG3 type of doubly hybrid density functionals: Theory, implementation, and assessment 期刊论文 Su, Neil Qiang|Zhang, Igor Ying|Xu, Xin|
57 Accurate prediction of nuclear magnetic resonance shielding constants: Towards the accuracy of CCSD(T) complete basis set limit 期刊论文 Sun, Meng|Zhang, Igor Ying|Wu, Anan|Xu, Xin|
58 Cu2Zn(Sn,Ge)Se4 and Cu2Zn(Sn,Si)Se4 Alloys as Photovoltaic Materials: Structural and Electronic Properties 期刊论文 Qiang Shu|Ji-Hui Yang|Shiyou Chen|Bing Huang|Hongjun Xiang|Xin-Gao Gong|Su-Huai Wei|
59 Theoretical studies on Grignard reagent formation: radical mechanism versus non-radical mechanism 期刊论文 Chen, Zhe-Ning|Fu, Gang|Xu, Xin|
60 Microsolvation of LiI and CsI in Water: Anion Photoelectron Spectroscopy and ab initio Calculations 期刊论文 Li, Ren-zhong|Liu, Cheng-Wen|Gao, Yi Qin|Jiang, Hong|Xu, Hong-Guang|Zheng, Wei-Jun|
61 Oxidation Mechanism of Si(111)-7 x 7 by Water: A Theoretical Study 期刊论文 Wang, Xinlan|Duan, Sai|Xu, Xin|
62 Synthesis of Isoreticular Zinc(II)-Phosphonocarboxylate Frameworks and Their Application in the Friedel-Crafts Benzylation Reaction 期刊论文 Deng, Mingli|Ling, Yun|Xia, Bing|Chen, Zhenxia|Zhou, Yaming|Liu, Xiaofeng|Yue, Bin|He, Heyong|
63 Novel Iso-Reticular Zn(II) Metal-Organic Frameworks constructed by Trinuclear-Triangular and Paddle-Wheel Units: Synthesis, Structure and Gas Adsorption 期刊论文 Ling, Yun|Yang, Feilong|Deng, Mingli|Chen, Zhenxia|Liu, Xiaofeng|Weng, Linhong|Zhou, Yaming|
64 Simple Theoretical Model for Ion Cooperativity in Aqueous Solutions of Simple Inorganic Salts and Its Effect on Water Surface Tension 期刊论文 Gao, Yi Qin|
65 NO adsorption and transformation on the BaO surfaces from density functional theory calculations 期刊论文 Nai Xia Lu|Jing-Cong Tao|Xin Xu|
66 Formation of acrylates from ethylene and CO<sub>2</sub> on Ni complexes: A mechanistic viewpoint from a hybrid DFT approach 期刊论文 Wenping Guo|Carine Michel|Renate Schwiedernoch|Raphael Wischert|Xin Xu|Philippe Sautet|
67 Self-stopping effects of lithium penetration into silicon nanowires 期刊论文 Lang, Li|Dong, Chuanding|Chen, Guohong|Yang, Jihui|Gu, Xiao|Xiang, Hongjun|Wu, Ruqian|Gong, Xingao|
68 Calculations of ionization energies and electron affinities for atoms and molecules: A comparative study with different methods 期刊论文 Su N.Q.|Zhang I.Y.|Wu J.|Xu X.|
69 Microscopic Origin of the Deviation from Stokes–Einstein Behavior Observed in Dynamics of the KSCN Aqueous Solutions: A MD Simulation Study 期刊论文 Zhang, Qiang|Xie, Wenjun|Bian, HongTao|Gao, Yi Qin|Zheng, Junrong|Zhuang, Wei|
70 Prediction of (TiO2)(x)(Cu2O)(y) alloys for efficient photoelectrochemical water splitting 期刊论文 Liu, Heng-Rui|Yang, Ji-Hui|Zhang, Yue-Yu|Chen, Shiyou|Walsh, Aron|Xiang, Hongjun|Gong, Xingao|Wei, Su-Huai|
71 Theoretical Studies on Thermochemistry for Conversion of 5-Chloromethylfurfural into Valuable Chemicals 期刊论文 Liu, Gang|Wu, Jianming|Zhang, Igor Ying|Chen, Zhe-Ning|Li, Yong-Wang|Xu, Xin|
72 精确预测核磁共振屏蔽常数与化学位移 会议论文 孙萌|吴安安|徐昕|
73 Self-Assembled Water Molecules as a Functional Valve for a High-Pressure Nanocontainer 期刊论文 Chen, H. Y.|Sun, D. Y.|Gong, X. G.|Liu, Zhi-Feng|
74 Inhibitory Mechanism of Caspase-6 Phosphorylation Revealed by Crystal Structures, Molecular Dynamics Simulations, and Biochemical Assays 期刊论文 Cao, Qin|Wang, Xiao-Jun|Liu, Cheng-Wen|Liu, Dai-Fei|Li, Lan-Fen|Gao, Yi-Qin|Su, Xiao-Dong|
75 Fractional Charge Behavior and Band Gap Predictions with the XYG3 Type of Doubly Hybrid Density Functionals 期刊论文 Su, Neil Qiang|Yang, Weitao|Mori-Sanchez, Paula|Xu, Xin|
76 A zinc(II) metal-organic framework based on triazole and dicarboxylate ligands for selective adsorption of hexane isomers 期刊论文 Ling, Yun|Chen, Zhen-Xia|Zhai, Fu-Peng|Zhou, Ya-Ming|Weng, Lin-Hong|Zhao, Dong-Yuan|
77 Doubly hybrid density functional xDH-PBE0 from a parameter-free global hybrid model PBE0 期刊论文 Zhang, Igor Ying|Su, Neil Qiang|Bremond, Eric A. G.|Adamo, Carlo|Xu, Xin|
78 From protein denaturant to protectant: Comparative molecular dynamics study of alcohol/protein interactions 期刊论文 Shao, Qiang|Fan, Yubo|Yang, Lijiang|Gao, Yi Qin|
79 RRS-PBC: a molecular approach for periodic systems 期刊论文 Zhang, Igor Ying|Jiang Jun|Gao Bin|Xu Xin|Luo Yi|
80 Robustness in protein folding as revealed by molecular dynamics simulations 期刊论文 Shao, Qiang|Zhu, Weiliang|Gao, Yi Qin|
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