大规模蛋白质功能预测的高效算法研究

61872094
2018
F0213.生物信息计算与数字健康
朱山风
面上项目
研究员
复旦大学
65万元
生物信息学;数据挖掘;大规模蛋白质功能预测;机器学习
2019-01-01到2022-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 HPOAnnotator: improving large-scale prediction of HPO annotations by low-rank approximation with HPO semantic similarities and multiple PPI networks 期刊论文 Gao Junning;Liu Lizhi;Yao Shuwei;Huang Xiaodi;Mamitsuka Hiroshi;Zhu Shanfeng
2 BERTMeSH: deep contextual representation learning for large-scale high-performance MeSH indexing with full text 期刊论文 You Ronghui;Liu Yuxuan;Mamitsuka Hiroshi;Zhu Shanfeng
3 FullMeSH: improving large-scale MeSH indexing with full text 期刊论文 Dai Suyang;You Ronghui;Lu Zhiyong;Huang Xiaodi;Mamitsuka Hiroshi;Zhu Shanfeng
4 DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction 期刊论文 You Ronghui;Yao Shuwei;Mamitsuka Hiroshi;Zhu Shanfeng
5 NetGO 2.0: improving large-scale protein function prediction with massive sequence, text, domain, family and network information 期刊论文 Yao Shuwei;You Ronghui;Wang Shaojun;Xiong Yi;Huang Xiaodi;Zhu Shanfeng
6 NetGO: improving large-scale protein function prediction with massive network information 期刊论文 You Ronghui;Yao Shuwei;Xiong Yi;Huang Xiaodi;Sun Fengzhu;Mamitsuka Hiroshi;Zhu Shanfeng
7 HPOLabeler: improving prediction of human protein-phenotype associations by learning to rank 期刊论文 Liu Lizhi;Huang Xiaodi;Mamitsuka Hiroshi;Zhu Shanfeng
8 HPOFiller: identifying missing protein–phenotype associations by graph convolutional network 期刊论文 Liu Lizhi;Mamitsuka Hiroshi;Zhu Shanfeng
9 AttentionXML: Label Tree-based Attention-Aware Deep Model for High-Performance Extreme Multi-Label Text Classification. 会议论文 You Ronghui;Zhang Zihan;Wang Ziye;Dai Suyang;Mamitsuka Hiroshi;Zhu Shanfeng
10 HPODNets: deep graph convolutional networks for predicting human protein-phenotype associations 期刊论文 Liu Lizhi;Mamitsuka Hiroshi;Zhu Shanfeng
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