基于隐马尔科夫模型的癌症关联基因调控通道建模研究

30900321
2009
C1005.生物成像、电子与探针
王红强
青年科学基金项目
研究员
中国科学院合肥物质科学研究院
21万元
基因调控;独立变量群分析;癌症基因表达数据;隐马尔可夫模型
2010-01-01到2012-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 Robust Classification Method of Tumor Subtype by Using Correlation Filters 期刊论文 Wang, Shu-Lin|Zhu, Yi-Hai|Jia, Wei|Huang, De-Shuang|
2 APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility 期刊论文 Xia, Jun-Feng|Zhao, Xing-Ming|Song, Jiangning|Huang, De-Shuang|
3 A comparative study on feature selection in regression for predicting the affinity of TAP binding peptides 会议论文 Li, Xue-Ling1|Wang, Shu-Lin1, 2|
4 Using 2D principal component analysis to reduce dimensionality of gene expression profiles for tumor classification 会议论文 Wang, Shu-Lin1|Li, Min1|Wang, Hongqiang2|
5 Neighborhood Rough Set Reduction-Based Gene Selection and Prioritization for Gene Expression Profile Analysis and Molecular Cancer Classification 期刊论文 Hou, Mei-Ling|Wang, Shu-Lin|Li, Xue-Ling|Lei, Ying-Ke|
6 Multi-objective optimization using BFO algorithm 会议论文 Niu, Ben1, 2, 4|Wang, Hong2|Tan, Lijing3|Xu, Jun4|
7 Discovering the transcriptional modules using microarray data by penalized matrix decomposition 期刊论文 Zhang, Jun|Zheng, Chun-Hou|Liu, Jin-Xing|Wang, Hong-Qiang|
8 Gene selection using independent variable group analysis for tumor classification 期刊论文 Zheng, Chun-Hou|Chong, Yan-Wen|Wang, Hong-Qiang|
9 Optimized projection for sparse representation based classification 会议论文 Lu, Can-Yi1, 2|
10 Extracting local information for identifying differentially expressed pathways 会议论文 Hong-Qiang Wang|Zengfu Wang|Chun-Hou Zheng|
11 Protein-protein interaction affinity prediction based on interface descriptors and machine learning 会议论文 Li, Xue-Ling1|Zhu, Min2|Li, Xiao-Lai1|Wang, Hong-Qiang1|Wang, Shulin3|
12 A new method for identifying cancer-related gene association patterns 会议论文 Wang, Hong-Qiang1|Xie, Xin-Ping2|Li, Ding1|
13 A new method for identifying reliably correlated variables, Fuzzy Systems and Knowledge Discovery (FSKD), The 9th International Conference on, Chongqiang, China, 29-31 May 2012, pp. 765 - 769 会议论文 Xie, Xin-Ping|Wang, Hong-Qiang|
14 Improved Method for Predicting pi-Turns in Proteins Using a Two-Stage Classifier 期刊论文 Xia, Jun-Feng|You, Zhu-Hong|Wu, Min|Wang, Shu-Lin|Zhao, Xing-Ming|
15 A residual level potential of mean force based approach to predict protein-protein interaction affinity 会议论文 Li, Xue-Ling1|Hou, Mei-Ling1, 2|Wang, Shu-Lin1, 3|
16 Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data 期刊论文 You, Zhu-Hong|Lei, Ying-Ke|Gui, Jie|Huang, De-Shuang|Zhou, Xiaobo|
17 Similarity analysis of DNA sequences based on three 2-D cumulative ratio curves 会议论文 Yu, Hong-Jie1, 2, 3|
18 Similarity analysis of DNA barcodes sequences based on compressed feature vectors 会议论文 Yu, Hong-Jie1, 2, 3|
19 Prediction of Protein-Protein Interactions from Protein Sequence Using Local Descriptors 期刊论文 Yang, Lei|Xia, Jun-Feng|Gui, Jie|
20 Multi-step dimensionality reduction and semi-supervised graph-based tumor classification using gene expression data 期刊论文 Gui, Jie|Wang, Shu-Lin|Lei, Ying-Ke|
21 Specificity of Transporter Associated with Antigen Processing Protein as Revealed by Feature Selection Method 期刊论文 Li, Xue-Ling|Wang, Shu-Lin|Hou, Mei-Ling|
22 A pathway-based classification method that can improve microarray-based colorectal cancer diagnosis 会议论文 Wang, Hong-Qiang1|Xie, Xin-Ping2|Zheng, Chun-Hou3|
23 神经网络与统计学习的理论与应用研究 奖励 黄德双|郑春厚|杜吉祥|王红强|
24 Comparison of DNA truncated barcodes and full-barcodes for species identification 会议论文 Yu, Hong-Jie1, 2, 3|You, Zhu-Hong1, 2|
25 SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures 期刊论文 Wang, Hong-Qiang|Tuominen, Lindsey K.|Tsai, Chung-Jui|
26 A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network 期刊论文 You, Zhu-Hong|Yin, Zheng|Han, Kyungsook|Huang, De-Shuang|Zhou, Xiaobo|
27 A Markov chain model-based method for cancer classification 会议论文 Li, Ding|Wang, Hong-Qiang|
28 Novel graphical representation of genome sequence and its applications in similarity analysis 期刊论文 Yu, Hong-Jie|Huang, De-Shuang|
29 A novel discretization method for microarray-based cancer classification 会议论文 Li, Ding1, 2|Li, Rui1, 2|Wang, Hong-Qiang2|
30 Performance Comparison of Tumor Classification Based on Linear and Non-linear Dimensionality Reduction Methods 会议论文 Wang, Shu-Lin|You, Hong-Zhu|Lei, Ying-Ke|Li, Xue-Ling|
31 Protein-protein binding affinity prediction based on an SVR ensemble 会议论文 Li, Xueling1|Zhu, Min2|Li, Xiaolai1|Wang, Hong-Qiang1|Wang, Shulin3|
32 Predicting protein-protein interactions from protein sequences using meta predictor 期刊论文 Xia, Jun-Feng|Zhao, Xing-Ming|Huang, De-Shuang|
33 Increasing reliability of protein interactome by combining heterogeneous data sources with weighted network topological metrics 会议论文 You, Zhu-Hong1, 2|Li, Liping3|Yu, Hongjie1, 2, 4|Chen, Sanfeng5|Wang, Shu-Lin1, 6|
34 Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes 期刊论文 Chen, Peng|Wong, Limsoon|Li, Jinyan|
35 Prediction of protein-protein interaction sites by using autocorrelation descriptor and support vector machine 会议论文 Ren, Xiao-Ming1, 2|Xia, Jun-Feng1, 3|
36 Inferring the Transcriptional Modules Using Penalized Matrix Decomposition 会议论文 Zheng, Chun-Hou|Zhang, Lei|Ng, To-Yee|Shiu, Chi Keung|Wang, Shu-Lin|
37 CCC: Classifier combination via classifier 会议论文 Lu, Can-Yi1, 2|
38 Tumor Classification Based on Non-Negative Matrix Factorization Using Gene Expression Data 期刊论文 Zheng, Chun-Hou|Ng, To-Yee|Zhang, Lei|Shiu, Chi-Keung|Wang, Hong-Qiang|
39 Computational Methods for the Prediction of Protein-Protein Interactions 期刊论文 Xia, Jun-Feng|Wang, Shu-Lin|Lei, Ying-Ke|
40 SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures 期刊论文 Wang, Hong-Qiang|Tuominen, Lindsey K.|Tsai, Chung-Jui|
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