| 1 |
An Insight into Species from Same Descendent Aspect and the Application into Clostridia
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期刊论文 |
Wang Zhenjia;Zhou Chuan;Chang Zheng;Liu Bingqiang;Ma Qin;Li Guojun |
| 2 |
Network-Based Method for Inferring Cancer Progression at the Pathway Level from Cross-Sectional Mutation Data
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期刊论文 |
Wu Hao;Gao Lin;Kasabov Nikola K. |
| 3 |
Feature related multi-view nonnegative matrix factorization for identifying conserved functional modules in multiple biological networks
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期刊论文 |
Wang Peizhuo;Gao Lin;Hu Yuxuan;Li Feng |
| 4 |
Inferring Gene Regulatory Networks Using Conditional Regulation Pattern to Guide Candidate Genes
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期刊论文 |
Xiao Fei;Gao Lin;Ye Yusen;Hu Yuxuan;He Ruijie |
| 5 |
Block-based characterization of protease specificity from substrate sequence profile
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期刊论文 |
Qi Enfeng;Wang Dongyu;Gao Bo;Li Yang;Li Guojun |
| 6 |
An algorithmic perspective of de-novo cis-regulatory motif finding based on ChIP-seq data
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期刊论文 |
Liu Bingqiang;Yang Jinyu;Li Yang;McDermaid Adam;Ma Qin |
| 7 |
Unravelling personalized dysfunctional gene network of complex diseases based on differential network model
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期刊论文 |
Yu Xiangtian;Li Guojun;Chen Luonan;Zeng Tao |
| 8 |
Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns.
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期刊论文 |
Yang Xiaofei;Gao Lin;Zhang Shihua |
| 9 |
Revealing favorable and unfavorable residues in cooperative positions in protease cleavage sites
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期刊论文 |
E. Qi;D. Wang;Y. Li;G. Li;Z. Su |
| 10 |
Extracting Fitness Relationships and Oncogenic Patterns among Driver Genes in Cancer
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期刊论文 |
Zhang Xindong;Gao Lin;Jia Songwei |
| 11 |
Systematic DNA methylation analysis of multiple cell lines reveals common and specific patterns within and across tissues of origin
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期刊论文 |
Yang Xiaofei;Shao Xiaojian;Gao Lin;Zhang Shihua |
| 12 |
BinPacker: Packing-BasedDe NovoTranscriptome Assembly from RNA-seq Data
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期刊论文 |
Liu Juntao;Li Guojun;Chang Zheng;Yu Ting;Liu Bingqiang;Rick McMullen;Chen Pengyin;Huang Xiuzhen |
| 13 |
HPOSim: an R package for phenotypic similarity measure and enrichment analysis based on the Human Phenotype Ontology.
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期刊论文 |
Yue Deng;Lin Gao;Xiaocheng Huang;Xingli Guo;Bingbo Wang |
| 14 |
Defining and identifying cograph communities in complex networks.
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期刊论文 |
Songwei Jia;Lin Gao;Yong Gao;James Nastos |
| 15 |
lncSLdb: a resource for long non-coding RNA subcellular localization.
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期刊论文 |
Wen Xiao;Gao Lin;Guo Xingli;Li Xing;Huang Xiaotai;Wang Ying;Xu Haifu;He Ruijie;Jia Chenglong;Liang Feixiang |
| 16 |
Network-Based Method for Inferring Cancer Progression at the Pathway Level from Cross-Sectional Mutation Data
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期刊论文 |
Wu Hao;Gao Lin;Kasabov Nikola K |
| 17 |
Comparative DNA methylation analysis to decipher common and cell type-specific patterns among multiple cell types.
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期刊论文 |
Yang Xiaofei;Shao Xiaojian;Gao Lin;Zhang Shihua |
| 18 |
MiMod: A New Algorithm for Mining Biological Network Modules
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期刊论文 |
Li Yang;Liu Bingqiang;Li Jing;Li Guojun |
| 19 |
ppiPre: predicting protein-protein interactions by combining heterogeneous features (vol 7, pg S8, 2013)
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期刊论文 |
Deng Yue;Gao Lin;Wang Bingbo |
| 20 |
Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses
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期刊论文 |
Liu Bingqiang;Zhou Chuan;Li Guojun;Zhang Hanyuan;Zeng Erliang;Liu Qi;Ma Qin |
| 21 |
Goldindec: A Novel Algorithm for Raman Spectrum Baseline Correction
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期刊论文 |
Liu Juntao;Sun Jianyang;Huang Xiuzhen;Li Guojun;Liu Binqiang |
| 22 |
An adaptive integrated algorithm for noninvasive fetal ECG separation and noise reduction based on ICA-EEMD-WS.
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期刊论文 |
Guangchen Liu;Yihui Luan |
| 23 |
Equitable and List Equitable Colorings of Graphs with Bounded Maximum Average Degree
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期刊论文 |
Dong Aijun;Zou Qingsong;Li Guojun |
| 24 |
Bridger: a new framework for de novo transcriptome assembly using RNA-seq data
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期刊论文 |
Chang Z.;Li G.;Liu J.;Zhang Y.;Ashby C.;Cramer C.;Huang X. |
| 25 |
Computational prediction of sigma-54 promoters in bacterial genomes by integrating motif finding and machine learning strategies
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期刊论文 |
Liu Bingqiang;Han Ling;Liu Xiangrong;Wu Jichang;Ma Qin |
| 26 |
miES: predicting the essentiality of miRNAs with machine learning and sequence features.
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期刊论文 |
Song Fei;Cui Chunmei;Gao Lin;Cui Qinghua |
| 27 |
TransLiG: a de novo transcriptome assembler that uses line graph iteration
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期刊论文 |
Liu Juntao;Yu Ting;Mu Zengchao;Li Guojun |
| 28 |
scRNAss: a single-cell RNA-seq assembler via imputing dropouts and combing junctions
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期刊论文 |
J. Liu;X. Ren;G. Li |
| 29 |
Goldindec: A Novel Algorithm for Raman Spectrum Baseline Correction
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期刊论文 |
Liu Juntao;Sun Jianyang;Huang Xiuzhen;Li Guojun;Liu Bingqiang |
| 30 |
Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples
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期刊论文 |
Yu Xiangtian;Li Guojun;Zeng Tao;Chen Luonan |
| 31 |
Integrating phenotypic features and tissue-specific information to prioritize disease genes
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期刊论文 |
Deng Yue;Gao Lin;Guo Xingli;Wang Bingbo |
| 32 |
Revisiting operons: an analysis of the landscapeof transcriptional units in E. coli
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期刊论文 |
Mao Xizeng;Ma Qin;Liu Bingqiang;Chen Xin;Zhang Hanyuan;Xu Ying |
| 33 |
3D-PAF Curve: A Novel Graphical Representation of Protein Sequences for Similarity Analysis
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期刊论文 |
Mu Zengchao;Li Guojun;Wu Haiyan;Qi Xingqin |
| 34 |
Diversified Control Paths: A Significant Way Disease Genes Perturb the Human Regulatory Network
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期刊论文 |
Wang Bingbo;Gao Lin;Zhang Qingfang;Li Aimin;Deng Yue;Guo Xingli |
| 35 |
UniBic: Sequential row-based biclustering algorithm for analysis of gene expression data.
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期刊论文 |
Wang Zhenjia;Li Guojun;Robert W Robinson;Huang Xiuzhen |
| 36 |
Detection of Driver Modules with Rarely Mutated Genes in Cancers.
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期刊论文 |
Feng Li;Gao Lin;Wang Bingbo |
| 37 |
Predicting Potential Drugs for Breast Cancer based on miRNA and Tissue Specificity
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期刊论文 |
Yu Liang;Zhao Jin;Gao Lin |
| 38 |
Integrating phenotypic feature and tissue-specificnetworks to prioritize disease genes.
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期刊论文 |
Yue Deng;Lin Gao |
| 39 |
Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns
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期刊论文 |
Yang Xiaofei;Gao Lin;Zhang Shihua |
| 40 |
Uncovering driver DNA methylation patterns in non-smoking early stagelung adenocarcinoma
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期刊论文 |
XinDong Zhang;Lin Gao;Zhiping Liu;Luonan Chen |
| 41 |
Protein-protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique
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期刊论文 |
Wang Xiaoying;Yu Bin;Ma Anjun;Chen Cheng;Liu Bingqiang;Ma Qin |
| 42 |
Conserved Disease Modules Extracted From Multilayer Heterogeneous Disease and Gene Networks for Understanding Disease Mechanisms and Predicting Disease Treatments
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期刊论文 |
Yu Liang;Yao Shunyu;Gao Lin;Zha Yunhong |
| 43 |
Neighbor sum distinguishing total colorings of planar graphs
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期刊论文 |
Hualong Li;Laihao Ding;Bingqiang Liu;Guanghui Wang |
| 44 |
Discovering potential cancer driver genes by an integrated network-based approach
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期刊论文 |
Shi Kai;Gao Lin;Wang Bingbo |
| 45 |
Prediction of Driver Modules via Balancing Exclusive Coverages of Mutations in Cancer Samples
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期刊论文 |
Gao Bo;Zhao Yue;Li Yang;Liu Juntao;Wang Lushan;Li Guojun;Su Zhengchang |
| 46 |
Integrative Analysis of Transcription Factor Combinatorial Interactions Using a Bayesian Tensor Factorization Approach
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期刊论文 |
Ye Yusen;Gao Lin;Zhang Shihua |
| 47 |
MaxMIF: a new method for identifying cancer driver genes through effective data integration
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期刊论文 |
Y. Hou;B. Gao;G. Li;Z. Su |
| 48 |
An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes
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期刊论文 |
Liu Bingqiang;Zhang Hanyuan;Zhou Chuan;Li Guojun;Fennell Anne;Wang Guanghui;Kang Yu;Liu Qi;Ma Qin |
| 49 |
Uncovering Driver DNA Methylation Events in Nonsmoking Early Stage Lung Adenocarcinoma
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期刊论文 |
Zhang Xindong;Gao Lin;Liu Zhi-Ping;Jia Songwei;Chen Luonan |
| 50 |
TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs
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期刊论文 |
Liu Juntao;Yu Ting;Jiang Tao;Li Guojun |
| 51 |
An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes
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期刊论文 |
Liu Bingqiang;Zhang Hanyuan;Zhou Chuan;Li Guojun;Fennell Anne;Wang Guanghui;Kang Yu;Liu Qi;Ma Qin |
| 52 |
Identification of driver modules in pan-cancer via coordinating coverage and exclusivity
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期刊论文 |
Gao Bo;Li Guojun;Liu Juntao;Li Yang;Huang Xiuzhen |
| 53 |
Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework
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期刊论文 |
Yang Jinyu;Ma Anjun;Hoppe Adam D;Wang Cankun;Li Yang;Zhang Chi;Wang Yan;Liu Bingqiang;Ma Qin |
| 54 |
Prediction of Novel Drugs for Hepatocellular Carcinoma Based on Multi-Source Random Walk
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期刊论文 |
Yu Liang;Su Ruidan;Wang Bingbo;Zhang Long;Zou Yapeng;Zhang Jing;Gao Lin |
| 55 |
Prediction of new drug indications based on clinical data and network modularity
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期刊论文 |
Yu Liang;Ma Xiaoke;Zhang Long;Zhang Jing;Gao Lin |
| 56 |
Systematic tracking of coordinated differential network motifs identifies novel disease-related genes by integrating multiple data
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期刊论文 |
Shi Kai;Gao Lin;Wang Bingbo |
| 57 |
The extraction of drug-disease correlations based on module distance in incomplete human interactome
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期刊论文 |
Yu Liang;Wang Bingbo;Ma Xiaoke;Gao Lin |
| 58 |
Identifying Cancer Specific Driver Modules Using a Network-Based Method
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期刊论文 |
Li Feng;Gao Lin;Wang Peizhuo;Hu Yuxuan |
| 59 |
Detection of driver pathways using mutated gene network in cancer
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期刊论文 |
Li Feng;Gao Lin;Ma Xiaoke;Yang Xiaofei |
| 60 |
BinPacker: Packing-Based De NovoTranscriptome Assembly from RNA-seq Data
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期刊论文 |
Liu Juntao;Li Guojun;Chang Zheng;Yu Ting;Liu Bingqiang;McMullen Rick;Chen Pengyin;Huang Xiuzhen |
| 61 |
The Two-Component System RsrS-RsrR Regulates the Tetrathionate Intermediate Pathway for Thiosulfate Oxidationin Acidithiobacillus caldus
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期刊论文 |
Wang Zhao-Bao;Li Ya-Qing;Lin Jian-Qun;Pang Xin;Liu Xiang-Mei;Liu Bing-Qiang;Wang Rui;Zhang Cheng-Jia;Wu Van;Lin Jian-Qiang;Chen Lin-Xu |
| 62 |
Coloring the Square of Sierpinski Graphs
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期刊论文 |
Xue Bing;Zuo Liancui;Li Guojun |
| 63 |
Exploring triad-rich substructures by graph-theoretic characterizations in complex networks
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期刊论文 |
Jia Songwei;Gao Lin;Gao Yong;Nastos James;Wen Xiao;Zhang Xindong;Wang Haiyang |
| 64 |
Optimal control nodes in disease-perturbed networks as targets for combination therapy
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期刊论文 |
Hu Yuxuan;Chen Chia hui;Ding Yang yang;Wen Xiao;Wang Bingbo;Gao Lin;Tan Kai |
| 65 |
DCGR: feature extractions from protein sequences based on CGR via remodeling multiple information
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期刊论文 |
Mu Zengchao;Yu Ting;Qi Enfeng;Liu Juntao;Li Guojun |
| 66 |
Identification of lncRNAs-gene interactions in transcription regulation based on co-expression analysis of RNA-seq data
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期刊论文 |
Lu Sijie;Xie Juan;Li Yang;Yu Bin;Ma Qin;Liu Bingqiang |
| 67 |
Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity
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期刊论文 |
Zhang Xindong;Gao Lin;Liu Zhi-Ping;Chen Luonan |
| 68 |
Viewing the Meso-Scale Structures in Protein-Protein Interaction Networks Using 2-Clubs
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期刊论文 |
Jia Songwei;Gao Lin;Gao Yong;Nastos James;Wen Xiao;Huang Xiaotai;Wang Haiyang |
| 69 |
Advances in long noncoding RNAs: identification, structure prediction and function annotation
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期刊论文 |
Guo Xingli;Gao Lin;Wang Yu;Chiu David K. Y.;Wang Tong;Deng Yue |
| 70 |
Exploring triad-rich substructures bygraph-theoretic characterizations in complex networks
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期刊论文 |
Songwei Jia;Lin Gao;Yong Gao |
