仅基于RNA-Seq数据拼装可变剪接转录组的计算方法研究

61272016
2012
F0213.生物信息计算与数字健康
李国君
面上项目
教授
山东大学
60万元
转录组;同型异构体;可变剪接;外显子;算法
2013-01-01到2016-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes 期刊论文 G. Wang|Y. Kang|Q. Liu|Q. Ma|
2 UniBic: Sequential row-based biclustering algorithm for analysis of gene expression data 期刊论文 Z. Wang|G. Li|R. Robinson|X. Huang|
3 BinPacker: packing-based de novo transcriptome assembly from RNA-seq data 期刊论文 B. Gao|B. Liu|M. McMullen|X. Huang|
4 Unravelling personalized dysfunctional gene network of complex diseases based on differential network model 期刊论文 X. Yu|X. Wang|G. Li|L. Chen|
5 The Impacts of Read Length and Transcriptome Complexity for DeNovo Assembly: A Simulation Study 期刊论文 Z. Chang|Z. Wang|G. Li|X. Huang|
6 TransComb: an ab initio transcriptome assembler via combing junctions in splicing graphs 期刊论文 J. Liu|T. Yu|T. Jiang|G. Li|
7 Elucidation of Operon Structures across Closely Related BacterialGenomes 期刊论文 C. Zhou|Q. Ma|G. Li|
8 Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses 期刊论文 B. Liu|C. Zhou|G. Li|Q. Ma|
9 Bridger: A new framework for de novo transcriptome assembly using RNA sequence data 期刊论文 Z. Chang|G. Li|X. Huang|
10 A New Algorithm for Detecting Coevolving Amino AcidSites in Proteins 期刊论文 J. Sun|L. Wang|G. Li|B. Liu|
11 Prediction and early diagnosis of complex diseases byedge-network 期刊论文 X. Yu|G. Li|L. Chen|
12 Integrative enrichment analysis: a new computational method to Detect dysregulated pathways in heterogeneous samples 期刊论文 X. Yu|T. Ceng|G. Li|
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