蛋白质残基间相互作用预测算法研究及其在三级结构预测中的应用

31770775
2017
C0504.物理生物学
卜东波
面上项目
研究员
中国科学院计算技术研究所
60万元
三级结构预测;蛋白质;深度学习;Markov随机场模型;残基间相互作用
2018-01-01到2021-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文 Chao Wang;Yi Wei;Haicang Zhang;Lupeng Kong;Shiwei Sun;Wei-Mou Zheng;Dongbo Bu
2 Multistage Mass Spectrometry with Intelligent Precursor Selection for N-Glycan Branching Pattern Analysis 期刊论文 Chuncui Huang;Hui Wang;Dongbo Bu;Jinyu Zhou;Junchuan Dong;Jingwei Zhang;Huanyu Gao;Yaojun Wang;Wengang Chai;Shiwei Sun;Yan Li
3 FALCON2: a web server for high-quality prediction of protein tertiary structures 期刊论文 Fusong Ju;Lupeng Kong;Haicang Zhang;Shiwei Sun;Dongbo Bu
4 DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning 期刊论文 Chen Hao;Shaw Dipan;Zeng Jianyang;Bu Dongbo;Jiang Tao
5 Toward automated identification of glycan branching patterns using multistage mass spectrometry with intelligent precursor selection 期刊论文 Sun Shiwei;Huang Chuncui;Wang Yaojun;Liu Yaming;Zhang Jingwei;Zhou Jinyu;Gao Feng;Yang Fei;Chen Runsheng;Mulloy Barbara;Chai Wengang;Li Yan;Bu Dongbo
6 Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文 Fusong Ju;Jianwei Zhu;Guozheng Wei;Shiwei Sun;Qi Zhang;Dongbo Bu
7 Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文 Zhang Haicang;Zhang Qi;Ju Fusong;Zhu Jianwei;Gao Yujuan;Xie Ziwei;Deng Minghua;Sun Shiwei;Zheng Wei-Mou;Bu Dongbo
8 ProALIGN: Directly learning alignments for protein structure prediction via exploiting context-specific alignment motifs 会议论文 Lupeng Kong;Fusong Ju;Wei-Mou Zheng;Shiwei Sun;Jinbo Xu;Dongbo Bu
9 ISSEC: inferring contacts among protein secondary structure elements using deep object detection 期刊论文 Fusong Ju;Lupeng Kong;Wei-Mou Zheng;Jianwei Zhu;Shiwei Sun;Qi Zhang;Dongbo Bu
10 Protein threading using residue co-variation and deep learning 期刊论文 Zhu Jianwei;Wang Sheng;Bu Dongbo;Xu Jinbo
11 Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts 期刊论文 Jianwei Zhu;Haicang Zhang;Shuai Cheng Li;Chao Wang;Lupeng Kong;Shiwei Sun;Wei-Mou Zheng;Dongbo Bu
12 CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文 Fusong Ju;Lupeng Kong;Wei-Mou Zheng;Jianwei Zhu;Tie-Yan Liu;Bin Shao;Dongbo Bu
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