【61173085】基于新一代测序数据的全基因组拼接组装算法研究国家自然基金项目

基于新一代测序数据的全基因组拼接组装算法研究

项目批准号： 61173085

批准年份： 2011

学科分类： F0213.生物信息计算与数字健康

项目负责人：王亚东

资助类别：面上项目

负责人职称：教授

依托单位：哈尔滨工业大学

资助金额： 55万元

关键词：新一代测序数据;全基因组拼接组装;reads引导

起止时间： 2012-01-01到2015-12-31

中英文摘要
结题摘要
结题报告
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序号	标题	类型	作者
1	A generalized topological entropy for analyzing the complexity of DNA sequences.	期刊论文	Xu, Li\|Peng, Jiajie\|Wang, Yong\|Wang, Yadong\|
2	PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM and Look Ahead Approach.	期刊论文	Yiu, Siu Ming\|Quan, Guangri\|Liu, Bo\|Wang, Yadong\|
3	Progress on Web-based Genome Browser Technology	期刊论文	Zhang Hai-Chuan\|Li Jie\|Wang Ya-Dong\|
4	Hidden Markov induced Dynamic Bayesian Network for recovering time evolving gene regulatory networks.	期刊论文	Zhu, Shijia\|Wang, Yadong\|
5	LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data	期刊论文	Tan, Renjie\|Zhang, Tianjiao\|Li, Yu\|Wang, Yadong\|
6	rHAT: fast alignment of noisy long reads with regional hashing.	期刊论文	Liu, Bo\|Guan, Dengfeng\|Teng, Mingxiang\|Wang, Yadong\|
7	An integrative approach for measuring semantic similarities using gene ontology	期刊论文	Li, Hongxiang\|Jiang, Qinghua\|Wang, Yadong\|Chen, Jin\|
8	LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression.	期刊论文	Peng, Jiajie\|Liu, Guiyou\|Li, Yu\|Wang, Yadong\|
9	Improvements on a privacy-protection algorithm for DNA sequences with generalization lattices	期刊论文	Li, Guang\|Wang, Yadong\|Su, Xiaohong\|
10	Joint detection of copy number variations in parent-offspring trios.	期刊论文	Juan, Liran\|Zhu, Xiaolin\|Li, Bingshan\|Wang, Yadong\|
11	misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads.	期刊论文	Liu, Bo\|Dong, Yucui\|Zhou, Guohui\|Wang, Yadong\|
12	PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach	会议论文
13	Transcriptional regulation prediction of antiestrogen resistance in breast cancer based on RNA polymerase II binding data	期刊论文	Zhang, Denan\|Wang, Guohua\|Wang, Yadong\|
14	TF2LncRNA: identifying common transcription factors for a list of lncRNA genes from ChIP-Seq data.	期刊论文	Wang, Yadong\|Ma, Rui\|Wu, Xiaoliang\|Li, Yu\|
15	GLProbs: Aligning multiple sequences adaptively	会议论文
16	regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions	期刊论文	Foroud, Tatiana\|Edenberg, Howard J.\|Econs, Michael J.\|Liu, Yunlong\|
17	Towards integrative gene functional similarity measurement	期刊论文	Peng, Jiajie\|Wang, Yadong\|Chen, Jin\|
18	Extending Gene Ontology with Gene Association Networks.	期刊论文	Wang, Tao\|Wang, Jixuan\|Wang, Yadong\|Chen, Jin\|
19	Potential roles of microRNAs in regulating long intergenic noncoding RNAs	期刊论文	JLiran Juan, Guohua Wang, Milan Radovich, Bryan P\|
20	ON JOINT SPECTRUM OF INFINITE DIRECT SUMS	期刊论文	Jin, Shulin\|Jiang, Qinghua\|Wang, Yadong\|Duan, Guangren\|
21	Genome-wide identification of allele-specific effects on gene expression for single and multiple individuals	期刊论文	Zhang S, Wang F, Wang H, Zhang F, Xu B, Li X, Wang\|
22	Empirical Bayes Model Comparisons for Differential Methylation Analysis	期刊论文	Liu, Yunlong\|Huang, Tim H. M.\|Nephew, Kenneth P.\|Balch, Curt\|
23	SIDD: A Semantically Integrated Database towards a Global View of Human Disease	期刊论文	Li J\|Zhang T\|Xu P\|Wang Yadong\|
24	An evaluation of copy number variation detection tools from whole-exome sequencing data.	期刊论文	Guo, Hongzhe\|Jiang, Qinghua\|Allen, Andrew S.\|Zhu, Mingfu\|
25	The personal genome browser: visualizing functions of genetic variants.	期刊论文	Liu, Yongzhuang\|Li, Jie\|Zhang, Tianjiao\|Wang, Yadong\|
26	A Privacy-Preserving Classification Method Based on Singular Value Decomposition	期刊论文	Li, Guang\|Wang, Yadong\|
27	A gradient-boosting approach for filtering de novo mutations in parent-offspring trios.	期刊论文	Li, Bingshan\|Tan, Renjie\|Zhu, Xiaolin\|Wang, Yadong\|
28	PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants	期刊论文	Jiang, Yue\|Wang, Yadong\|Brudno, Michael\|
29	Accuracy Limits for the Thickness Measurement of the Hip Joint Cartilage in 3-D MR Images: Simulation and Validation	期刊论文	Guo, Changyong\|Wang, Yadong\|Bai, Jing\|Tamura, Shinichi\|
30	IRcall and IRclassifier: two methods for flexible detection of intron retention events from RNA-Seq data	期刊论文	Bai, Yang\|Ji, Shufan\|Wang, Yadong\|
31	Modeling Exon Expression Using Histone Modifications	期刊论文	Zhu, Shijia\|Wang, Guohua\|Liu, Bo\|Wang, Yadong\|
32	SemFunSim: a new method for measuring disease similarity by integrating semantic and gene functional association.	期刊论文	Li, Jie\|Ju, Peng\|Peng, Jiajie\|Wang, Yadong\|
33	Automatic segmentation technique for acetabulum and femoral head in CT images	期刊论文	Wang, Yadong\|Guo, Changyong\|Bai, Jing\|Tamura, Shinichi\|
34	Genetic control of primary microRNA insight into cis- and trans-regulatory variations by RNA-seq	期刊论文	Gong, Binsheng\|Zhang, Fan\|Li, Xia\|Wang, Yadong\|

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