基于高通量测序数据的多层次生物网络分析理论与关键技术

61332014
2013
F0213.生物信息计算与数字健康
尚学群
重点项目
教授
西北工业大学
260万元
生物网络;重大疾病;高通量测序数据处理与分析
2014-01-01到2018-12-31
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 CHclust: a novel alignment-free sequence clustering method based on Composition Vector and Hidden Markov Model. 会议论文 Yanjie Li;Xuequn Shang;Runzun Hu
2 BCDForest: a boosting cascade deep forest model towards the classification of cancer subtypes based on gene expression data 期刊论文 Yang Guo;Shuhui Liu;Zhanhuai Li;Xuequn Shang
3 Self-adjusting Ant Colony Optimization Based on Information Entropy for Detecting Epistatic Interactions 会议论文 Boxin Guan;Yuhai Zhao
4 Multiphasic and dynamic changes in alternative splicing during induction of pluripotency are coordinated by numerous RNA binding proteins 期刊论文 Cieply B;Park JW;Nakauka-Ddamba A;Bebee TW;Guo Y;Shang X;Lengner CJ;Xing Y;Carstens RP
5 Self-adjusting Ant Colony Optimization Based on Information Entropy for Detecting Epistatic Interactions 期刊论文 Boxin Guan;Yuhai Zhao
6 基于解耦概要图的大规模图数据高效分布式挖掘算法 奖励 李玲;印莹;赵宇海;王国仁
7 Effective k-Vertex Connected Component Detection in Large-Scale Networks 会议论文 Yuan Li;Yuhai Zhao;Guoren Wang;Feida Zhu;Yubao Wu;Shingle Shi
8 一种有效的基于GraphX的分布式结构化图聚类算法 会议论文 时生乐;赵宇海;李源;印莹;王国仁
9 Mining Coterie Patterns from Instagram Photo Trajectories for Recommending Popular Travel Routes 期刊论文 Yaxin Yu;Yuhai Zhao;Ge Yu;GuorenWang
10 基因表达数据局部聚类技术研究 专著 印莹;赵宇海
11 多样性度量的Top-K区分子图挖掘 奖励 王章辉;赵宇海;王国仁;李源
12 A fast and high performance multiple data integration algorithm for identifyinghuman disease genes 期刊论文 B Chen;M Li;JX Wang;XQ Shang;FX Wu
13 Effective k-Vertex Connected Component Detection in Large-Scale Networks. 奖励 Yuan Li;Yuhai Zhao;Guoren Wang
14 Improving Multi-instance Multi-label Learning byExtreme Learning Machine 会议论文 Chenguang Li; Ying Yin; Yuhai Zhao; Guang Chen; Libo Qin
15 Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach 会议论文 Jiajie Peng;Xuanshuo Zhang;Weiwei Hui;Junya Lu;Qianqian Li;Xuequn Shang
16 Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during the epithelial to mesenchymal transition 期刊论文 Yang Y;Park JW;Bebee TW;Warzecha CC;Guo Y;Shang X;Xing Y;Carstens RP
17 GDC: A Robust Tag Recommendation Algorithm 期刊论文 Ying Yin; Yuhai Zhao; Bin Zhang; Gang Sheng
18 HGDE: A Search History Guided Differential Evolution Algorithm for Detecting Epistatic Interactions 会议论文 Boxin Guan;Yuhai Zhao;Yin Ying
19 A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data 奖励 Shiqun Sun;Yabo Chen;Xuequn Shang
20 Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach 期刊论文 Jiajie Peng;Xuanshuo Zhang;Weiwei Hui;Junya Lu;Qianqian Li;Shuhui Liu;Xuequn Shang
21 基于多开发者社区的用户推荐算法 期刊论文 1).时宇岑;印莹;赵宇海;张斌;王国仁
22 ELM-based Large-Scale Genetic Association Study via Statistically Significant Pattern 期刊论文 Yuan Li;Yuhai Zhao;Guoren Wang;Feida Zhu
23 Predicting disease-related genes using integrated biomedical networks 期刊论文 Jiajie Peng;Kun Bai;Xuequn Shang;Guohua Wang;Hansheng Xue;Shuilin Jin;Liang Cheng;Yadong Wan;Jin Chen
24 一种基于垂直分解的并行频 繁闭序列挖掘方法 专利 赵宇海
25 临界布尔网络的函数泛化问题研究 期刊论文 于雄香;沈良忠;尚学群;刘文斌
26 Extreme Learning Machine for large-scale graph classification based on MapReduc 期刊论文 Zhanghui Wang;Yuhai Zhao;Ye Yuan;Guoren Wan;Lei Chen
27 基于解耦概要图的大规模图数据高效分布式挖掘算法 会议论文 李玲;印莹;赵宇海;王国仁
28 Detection of Network Motif Based on a Novel Graph Canonization Algorithm from Transcriptional Regulation Networks 期刊论文 Jialu Hu;Xuequn Shang
29 An Incremental Updating Based Fast Phenotype Structure Learning Algorithm 会议论文 Hao Cheng;Yuhai Zhao;Ying Yin;Lijun Zhang
30 An Enhanced Extreme Learning Machine forEfficient Small Sample Classification 会议论文 Ying Yin; Yuhai Zhao; Ming Li; Bin Zhang
31 Detecting small attractors of largeboolean networks by function-reduction-based strategy 期刊论文 Qiben Zheng; Liangzhong Shen; Xuequn Shang; Wenbin Liu
32 WebNetCoffee: a web-based application to identify functionally conserved proteins from Multiple PPI networks 期刊论文 Jialu Hu;Yiqun Gao;Junhao He;Yan Zheng;Xuequn Shang
33 二分类图上的非冗余协同图模式挖掘算法 期刊论文 王章辉;赵宇海;王国仁;李源
34 Identifying consistent disease subnetworks using DNet 期刊论文 Peng Jiajie;Lu Junya;Shang Xuequn;Chen Jin
35 Low-rank Graph Regularized Sparse Coding 会议论文 Yupei Zhang;Shuhui Liu;Xuequn Shang;Ming Xiang
36 Improving ELM-basedService Quality Prediction by Concise Feature Extraction 期刊论文 Yuhai Zhao; Ying Yin; Gang Sheng; Bin Zhang; Guoren Wang
37 二分类图上的非冗余协同图模式挖掘算法 期刊论文 王章辉;赵宇海;王国仁;李源
38 一种基于垂直分解的并行频 繁闭序列挖掘方 专利 赵宇海
39 KF-finder: Identification of key factors from host-microbial networks in cervical cancer 期刊论文 Jialu Hu;Yiqun Gao;Yan Zheng;Xuequn Shang
40 Identifying individual-cancer-related genes by rebalancing the training samples 期刊论文 B Chen;XQ Shang;M Li;JX Wang;FX Wu
41 Ant Colony Optimization with an Automatic Updating Mechanism for Constraint Satisfaction Problems 期刊论文 Boxin Guan;Yuhai Zhao
42 An Efficient and Effective Overlapping Communities Discovery based on Agglomerative Graph 会议论文 Ying Yin;Liang Chen;Yuhai Zhao;He Li;Bin Zhang;Yongming Yan
43 KF-finder: Identification of key factors from () host-microbial networks in cervical cancer 会议论文 Jialu Hu;Yiqun Gao;Yan Zheng;Xuequn Shang
44 Afast and high performance multiple data integration algorithm for identifyinghuman disease genes 期刊论文 B Chen; M Li; JX Wang; XQ Shang; FX Wu
45 An Efficient Bipartite Graph Based Tag Recommendation Algorithm 会议论文 Ying Yin; Bin Zhang
46 Diversify and Elastic Cloud Resource Allocation based on Improved Genetic Algorithm 会议论文 Jian Wang;Wenyang Ke;Ying Yin;Bin Zhang
47 Investigations on factors influencing HPO-based semantic similarity calculation 期刊论文 Peng Jiajie;Li Qianqian;Shang Xuequn
48 Net2Image: A Network Representation Method for Identifying Cancer-Related Genes 奖励 Bolin Chen;Yuqiong Jin;Xuequn Shang
49 Multi-Graph Multi-Label Learning based on Extreme Learning Machine 会议论文 Yuhai Zhao;Hengchang Duan;Guoren Wang
50 基因表达数据中局部模式的查询 期刊论文 姜涛;李战怀;尚学群;陈伯林;李卫榜
51 Copy Number Variation Related Disease Genes 会议论文 Chaima Aouiche;Xuequn Shang;Bolin Chen
52 Improvement of cancer subtype prediction by incorporating transcriptome expression data and heterogeneous biological networks 期刊论文 Yang Guo;Yang Qi;Zhanhuai Li;Xuequn Shang
53 Multi-Objective Evolutionary Clustering for Large-scale Dynamic Community Detection 期刊论文 Ying Yin;Yuhai Zhao;He Li
54 Detecting small attractors of largeboolean networks by function-reduction-based strategy 期刊论文 Qiben Zheng;Liangzhong Shen;Xuequn Shang;Wenbin Li
55 Measuring Phenotype Semantic Similarity using Human Phenotype Ontology 会议论文 Jiajie Peng;HanshengXue;Yukai Shao;Xuequn Shang;Yadong Wang;Jin Chen
56 Enhancing ELM by Markov Boundary based Features Selection 期刊论文 Ying Yin;Yuhai Zhao;Bin Zhang;Chenguang Li;Song Guo
57 MiteFinderII: a novel tool to identify miniature inverted-repeat transposable elements hidden in eukaryotic genomes 期刊论文 Hu Jialu;Zheng Yan;Shang Xuequn
58 Super-Graph Classification Based on Composite Subgraph Features and Extreme Learning Machine 期刊论文 Jun Pang;Yuhai Zhao;Jia Xu;Yu Gu;Ge Yu
59 基于解耦概要图的大规模图数据高效分布式挖掘算法 期刊论文 李玲;印莹;赵宇海;王国仁
60 Measuring phenotype-phenotype similarity through the interactome 会议论文 Jiajie Peng;Weiwei Hui;Xuequn Shang
61 A web tool for tissue-specific gene ontology enrichment 会议论文 Jiajie Peng;Guilin Lu;Hansheng Xue;Xuequn Shang
62 HB-File: An efficient and effective high-dimensional big data storage structure based on US-ELM 期刊论文 Linlin Ding;Yu Liu;Baishuo Han;Shiwen Zhang
63 Finding Susceptible and Protective Interaction Patterns in Large-Scale Genetic Association Study 期刊论文 Yuan Li;Yuhai Zhao;Guoren Wang;Xiaofeng Zhu;Xiang Zhang;Zhanghui Wang;Jun Pang
64 Constrained query of Order-Preserving SubMatrix in gene expression data 期刊论文 Tao Jiang;Zhanhuai Li;Xuequn Shang;Bolin Chen;Weibang Li;Zhilei Yin
65 MD-SVM: A novel SVM-based algorithm for the motif discovery of transcription factor binding sites 会议论文 ialu Hu;Jingru Wang;Xuequn Shang
66 Hierarchical Similarity Network Fusion for Discovering Cancer Subtypes 会议论文 Shuhui Liu;Xuequn Shang
67 HIGA: a Running History Information Guided Genetic Algorithm for Protein-Ligand Docking 会议论文 关博馨;张长胜;赵宇海
68 Multi-Graph Multi-Label Learning Based on Entropy 期刊论文 Zixuan Zhu;Yuhai Zhao
69 Predicting stage-specific cancer related genes and their dynamic modules by integrating multiple datasets 会议论文 Aouiche Chaima;Bolin Chen;Xuequn Shang
70 MiteFinder: A fast approach to identify miniature inverted-repeat transposable elements on a genome-wide scale 会议论文 Jialu Hu;Yan Zheng;Xuequn Shang
71 Identification of Protein Complexes and Functional Modules in Integrated PPI Networks 会议论文 Yang Guo;Xuequn Shang;Qingping Zhu;Mingkui Huang;Zhanhuai Li
72 An efficient algorithm to identify the optimal one-bit perturbation based on the basin-of-state size of Boolean networks 期刊论文 M Hu;L Shen;X Zan;X Shang;W Liu
73 Finding Top-k CoveringIrreducible Contrast Sequence Rules for Disease Diagnosis 期刊论文 Yuhai Zhao; Yuan Li; Ying Yin; Gang Sheng
74 一种有效的基于GraphX的分布式结构化图聚类算法 期刊论文 时生乐;赵宇海;李源;印莹;王国仁
75 A Similarity Regression Fusion Model for Integrating Multi-Omics Data to Identify Cancer Subtypes 期刊论文 Yang Guo;Jianning Zheng;Xuequn Shang;Zhanhuai Li
76 Identifying term relations cross different gene ontology categories 期刊论文 Peng Jiajie;Wang Honggang;Lu Junya;Shang Xuequn
77 A two-step logistic regression algorithm for identifying individual-cancer-related genes 会议论文 Bolin Chen; Xuequn Shang; Min Li; Jianxin Wang; Fang-Xiang Wu
78 Identification of lncRNA-disease association using bi-random walks 会议论文 Yiqun Gao;Jialu Hu;Xuequn Shang
79 HGDE: A Search History Guided Differential Evolution Algorithm for Detecting Epistatic Interactions 期刊论文 Boxin Guan;Yuhai Zhao;Ying Yin
80 Measuring phenotype-phenotype similarity through the interactome 期刊论文 Jiajie Peng;Weiwei Hui;Xuequn Shang
81 多样性度量的Top-K区分子图挖掘 期刊论文 王章辉;赵宇海;王国仁;李源
82 An Novel Web Mashup Discovery Framework 会议论文 Ying Yin;Xizhe Zhang;Honghong Xu;Bin Zhang
83 一种基于图压缩的重叠社区发现算法 期刊论文 赵宇海;印莹;王雪
84 Subpathway Analysis based on Signaling Pathway Impact Analysis of Signaling Pathway 期刊论文 Xianbin Li; Liangzhong Shen; Xuequn Shang; Wenbin Liu
85 Large-ScaleGraph Classification Based on Evolutionary Computation with MapReduce 会议论文 Zhanghui Wang; Yuhai Zhao; Guoren Wang; Yurong Cheng
86 Improving ELM-based microarray data classification by diversified sequence features selection 期刊论文 Yuhai Zhao;Guoren Wang;Ying Yin;Yuan Li;Zhanghui Wang
87 基于多开发者社区的用户推荐算法 会议论文 时宇岑;印莹;赵宇海;张斌;王国仁
88 基于数字签名与Trie的保序子矩阵约束查询 期刊论文 姜涛;殷知磊;李战怀;尚学群;陈伯林;李卫榜
89 Identifying term relations cross different gene ontology categories 奖励 Jiajie Peng;Honggang Wang;Junya Lu;Weiwei Hui;Yadong Wang;Xuequn Shang
90 Copy number variation related disease genes 期刊论文 Chaima Aouiche;Xuequn Shang;Bolin Chen
91 A novel method to measure the semantic similarity of HPO terms 期刊论文 Peng Jiajie;Xue Hansheng;Shao Yukai;Shang Xuequn;Wang Yadong;Chen Jin
92 Finding Top-k CoveringIrreducible Contrast Sequence Rules for Disease Diagnosis 期刊论文 Yuhai Zhao; Yuan Li; Ying Yin; Gang Sheng
93 一种面向大规模图数据的统计显著子图挖掘算法 会议论文 赵宇海;印莹;李玲;王国仁
94 GDC: An Efficient Tag Recommendation Algorithm 会议论文 Ying Yin; Yuhai Zhao; Bin Zhang
95 Dynamic Self-HealingMechanism for Transactional Business Process 期刊论文 Yuhai Zhao; Ying Yin
96 Deep Subspace Similarity Fusion for the Prediction of Cancer Subtypes 会议论文 Bo Yang;huhui Liu;Shanmin Pang;Chenpai Pang;Xuequn Shang
97 HIGA: A Running History Information Guided Genetic Algorithm for Protein–Ligand Docking 期刊论文 Boxin Guan;Changsheng Zhang;Yuhai Zhao
98 一种面向大规模序列数据的交互特征并行挖掘算法 期刊论文 赵宇海;印莹;李源;汪嗣尧;王国仁
99 基于多目标演化聚类的大规模动态网络社区检测 期刊论文 李赫;印莹;李源;赵宇海;王国仁
100 ELM-based Large-Scale Genetic Association Study via Statistically Significant Pattern 会议论文 Yuan Li;Yuhai Zhao;Guoren Wang;Zhanghui Wang;Min Gao
101 一种基于弹性维特征向量优化抽取的协同 过滤推荐方法 专利 印莹;赵宇海
102 An Efficient ABC_DE_Based Hybrid Algorithm for Protein-Ligand Docking 期刊论文 Boxin Guan;Changsheng Zhang;Yuhai Zhao
103 Extreme LearningMachine for Large-Scale Graph Classification Based on MapReduce 会议论文 Zhanghui Wang; Yuhai Zhao; Guoren Wang
104 Ant Colony Optimization with an Automatic Adjustment Mechanism for Detecting Epistatic Interactions 期刊论文 Boxin Guan;Yuhai Zhao;Wenjuan Sun
105 多样性度量的区分子图挖掘 会议论文 王章辉;赵宇海;王国仁;李源
106 Net2Image: A network representation method for identifying cancer-related genes 会议论文 Bolin Chen;Yuqiong Jin;Xuequn Shang
107 一种基于多目标演化聚类的大规模动态网络社区检测算法 会议论文 李赫;印莹;赵宇海;李源;王国仁
108 一种面向图数据的投影聚类方法 专利 印莹;赵宇海
109 Efficient and Effective Software Defect Triage based ELM 会议论文 Enhui Xin;Ying Yin;Yuhai Zhao;Bin Zhang;Guoren Wang
110 一种面向大规模序列数据的交互特征并行挖掘算法 会议论文 赵宇海
111 An online tool for measuring and visualizing phenotype similarities using HPO 期刊论文 Jiajie Peng;Hansheng Xue;Weiwei Hui;Junya Lu;Bolin Chen;Qinghua Jiang;Xuequn Shang;Yadong Wang
112 Identifying essential proteins based on dynamic PPI networks and RNA-Seq datasets 期刊论文 XQ Shang;Y Wang;B Chen
113 基于多目标演化聚类的大规模动态网络社区检测 奖励 李赫;印莹;李源;赵宇海;王国仁
114 Improving ELM-based microarray data classification by diversified sequence features selection 期刊论文 Yuhai Zhao;Guoren Wang;Ying Yin;Yuan Li;Zhanghui Wang
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