生物网络研究

11021463
2010
A2014.凝聚态物理新兴与交叉领域
欧阳颀
创新研究群体项目
教授
北京大学
600万元
2011-01至2013-12
  • 中英文摘要
  • 结题摘要
  • 结题报告
  • 项目成果
  • 项目参与人
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序号 标题 类型 作者
1 Discovery of novel chemoeffectors and rational design of Escherichia coli chemoreceptor specificity 期刊论文 Bi Shuangyu;Yu Daqi;Si Guangwei;Luo Chunxiong;Li Tongqing;Ouyang Qi;Jakovljevic Vladimir;Sourjik Victor;Tu Yuhai;Lai Luhua
2 靛红类双功能抑制剂:调控SARS-3CL蛋白酶聚集状态与活性(英文) 期刊论文 周璐;金凤;刘莹;尚尔昌;魏平;李春梅;来鲁华;ZHOU Lu 1 3 JIN Feng 1 LIU Ying 1 2 SHANG Er-Chang 1 WEI Ping 1 LI Chun-Mei 1 LAI Lu-Hua 1 2 (1 Beijing National Laboratory for Molecular Sciences State Key Laboratory of Structural Chemistry of Unstable and Stable Species Institute of Physical Chemistry College of Chemistry and Molecular Engineering Peking University Beijing 100871 P.R.China;2 Center for Quantitative Biology Peking University Beijing 100871 P.R.China...
3 Hybridization and amplification rate correction for affymetrix SNP arrays 期刊论文 Wang Quan;Peng Peichao;Qian Minping;Wan Lin;Deng Minghua
4 Three-dimensional domain swapping in the protein structure space 期刊论文 Huang Yongqi;Cao Huaiqing;Liu Zhirong
5 Modular analysis of the probabilistic genetic interaction network 期刊论文 Qian, Minping|Zhu, Yunping|Li, Dong|Li, Fangting|Wang, Lin|Tang, Chao|Hou, Lin|Deng, Minghua|
6 Mechanism of 3D Domain Swapping for M-pro-C: Clues from Molecular Simulations 期刊论文 黄永棋;康雪;夏斌;刘志荣;HUANG Yong-Qi 1 2 3 KANG Xue 1 4 XIA Bin 1 4 5 LIU Zhi-Rong 1 2 3 (1 College of Chemistry and Molecular Engineering Peking University Beijing 100871 P.R.China;2 Beijing National Laboratory for Molecular Sciences State Key Laboratory for Structural Chemistry of Unstable and Stable Species Peking University Beijing 100871 P.R.China;3 Center for Quantitative Biology Peking University Beijing 100871 P.R.China;4 Beijing Nuclear Magnetic Resonance Center Peking University Beijing 100871 P.R.China...
7 Binding of Two Intrinsically Disordered Peptides to a Multi-Specific Protein: A Combined Monte Carlo and Molecular Dynamics Study 期刊论文 Staneva, Iskra|Huang, Yongqi|Liu, Zhirong|Wallin, Stefan|
8 Antibacterial properties of recombinant human non-pancreatic secretory phospholipase A(2) 期刊论文 Qiu Shunchen;Lai Luhua
9 Binding Site Detection and Druggability Prediction of Protein Targets for Structure-Based Drug Design 期刊论文 Yuan Yaxia;Pei Jianfeng;Lai Luhua
10 Microfluidic generation and dynamically switching of oxygen gradients applied to the observation of cell aerotactic behaviour 期刊论文 Li Ning;Luo Chunxiong;Zhu Xuejun;Chen Yong;Qi Ouyang;Zhou Liping
11 Induction of Pluripotency in Mouse Somatic Cells with Lineage Specifiers 期刊论文 Shu Jian;Wu Chen;Wu Yetao;Li Zhiyuan;Shao Sida;Zhao Wenhui;Tang Xing;Yang Huan;Shen Lijun;Zuo Xiaohan;Yang Weifeng;Shi Yan;Chi Xiaochun;Zhang Hongquan;Gao Ge;Shu Youmin;Yuan Kehu;He Weiwu;Tang Chao;Zhao Yang;Deng Hongkui
12 Sequence Preference of alpha-Helix N-Terminal Tetrapeptide 期刊论文 Qi Yifei;Liang Huanhuan;Han Xinping;Lai Luhua
13 A novel density control device for the study of cancer cell autocrine effect 期刊论文 Yang Wei;Li Zhaojun;Zhang Weilin;Luo Chunxiong;Ouyang Qi;Yang Gen;Wang Yugang
14 A Reverse Engineering Approach to Optimize Experiments for the Construction of Biological Regulatory Networks 期刊论文 Zhang Xiaomeng;Shao Bin;Wu Yangle;Qi Ouyang
15 Understanding traditional Chinese medicine anti-inflammatory herbal formulae by simulating their regulatory functions in the human arachidonic acid metabolic network 期刊论文 Gu, Shuo|Yin, Ning|Pei, Jianfeng|Lai, Luhua|
16 Adjustment method for microarray data generated using two-cycle RNA labeling protocol 期刊论文 Wang Fugui;Chen Rui;Ji Dong;Bai Shunong;Qian Minping;Deng Minghua
17 Identifying Allosteric Binding Sites in Proteins with a Two-State G(o)over-bar Model for Novel Allosteric Effector Discovery 期刊论文 Qi Yifei;Wang Qian;Tang Bo;Lai Luhua
18 Decision making of the p53 network: Death by integration 期刊论文 Ming Ni|Jikun Li|Jikun Li|Yuping Zhang|Yuping Zhang|Qi Ouyang|Qi Ouyang|Chao Tang|Chao Tang|
19 Scroll wave meandering induced by phase difference in a three-dimensional excitable medium 期刊论文 Yang, Zhao|Yang, Zhao|Gao, Shiyuan|Gao, Shiyuan|Ouyang, Qi|Ouyang, Qi|Wang, Hongli|Wang, Hongli|
20 Engineering a zinc binding site into the de novo designed protein DS119 with a beta alpha beta structure. 期刊论文 Luhua Lai
21 Operon Prediction Based On an Iterative Self-learning Algorithm 期刊论文 Wu Wen-Qi;Zheng Xiao-Bin;Liu Yong-Chu;Tang Kai;Zhu Huai-Qiu
22 Quinoline-4-methyl esters as human nonpancreatic secretory phospholipase A(2) inhibitors 期刊论文 Wu Yiran;Chen Zheng;Liu Ying;Yu Lanlan;Zhou Lu;Yang Suijia;Lai Luhua
23 A microfluidic synchronizer for fission yeast cells 期刊论文 Tian, Yuan|Luo, Chunxiong|Ouyang, Qi|
24 Dynamic behavior of small heat shock protein inhibition on amyloid fibrillization of a small peptide (SSTSAA) from RNase A 期刊论文 Xi Dong;Dong Xiao;Deng Wei;Lai Luhua
25 Dynamical topology and statistical properties of spatiotemporal chaos 期刊论文 Zhuang Quntao(庄群韬);Gao Xun(郜勋);Ouyang Qi(欧阳颀);Wang Hongli(王宏利)
26 Anchoring Intrinsically Disordered Proteins to Multiple Targets: Lessons from N-Terminus of the p53 Protein 期刊论文 Huang Yongqi;Liu Zhirong
27 Integrating multiple types of data to predict novel cell cycle-related genes 期刊论文 Wang, Lin|Qian, Minping|Hou, Lin|Li, Fangting|Deng, Minghua|
28 Inherent Relationships among Different Biophysical Prediction Methods for Intrinsically Disordered Proteins 期刊论文 Jin Fan;Liu Zhirong
29 Differentiating stem cells on patterned substrates for neural network formation 期刊论文 Luo ChunXiong;Liu Li;Ni XiaoFang;Wang Li;Nomura Shinichiro M.;Qi Ouyang;Chen Yong
30 Dynamic equilibrium between cancer stem cells and non-stem cancer cells in human SW620 and MCF-7 cancer cell populations 期刊论文 Gen Yang;Yi Quan;Weikang Wang;Qibin Fu;Jingwen Wu;Tao Mei;Jia Li;Yubo Tang;Chunxiong Luo;Qi Ouyang;Shaopeng Chen;Lijun Wu;Tom K. Hei;Yugang Wang
31 Statistical Analysis Reveals Co-Expression Patterns of Many Pairs of Genes in Yeast Are Jointly Regulated by Interacting Loci 期刊论文 Wang Lin;Zheng Wei;Zhao Hongyu;Deng Minghua
32 Towards structure-based protein drug design 期刊论文 Changsheng Zhang;Luhua Lai
33 Automated Design of Genetic Toggle Switches with Predetermined Bistability 期刊论文 Chen Shuobing;Zhang Haoqian;Shi Handuo(史寒朵);Ji Weiyue;Feng Jingchen;Gong Yan;Yang Zhenglin;Ouyang Qi(欧阳颀)
34 Optimization of 5-hydroxytryptamines as dual function inhibitors targeting phospholipase A(2) and leukotriene A(4) hydrolase 期刊论文 Meng Hu;Liu Ying;Zhai Yujing;Lai Luhua
35 A study of biases of DNA copy number estimation based on PICR model 期刊论文 Xiaoxing Cheng|Yongjian Kang|Lin Wan|Minping Qian|Minghua Deng|Quan Wang|Jianghan Qu|
36 Dynamic eicosanoid responses upon different inhibitor and combination treatments on the arachidonic acid metabolic network 期刊论文 He Chong;Wu Yiran;Lai Yongquan;Cai Zongwei;Liu Ying;Lai Luhua
37 A Lasso regression model for the construction of microRNA-target regulatory networks 期刊论文
38 Evidence of negative-index refraction in nonlinear chemical waves 期刊论文 Yuan Xujin;Wang Hongli;Ouyang Qi
39 Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes 期刊论文 Zheng Xiaobin;Hu Gang-Qing;She Zhen-Su;Zhu Huaiqiu
40 Slow and Bimolecular Folding of a De Novo Designed Monomeric Protein DS119 期刊论文 Cheng Zhu;Ziwei Dai;Huanhuan Liang;Tao Zhang;Feng Gai;Luhua Lai
41 A parallel diffusion-based microfluidic device for bacterial chemotaxis analysis 期刊论文 Si Guangwei;Yang Wei;Bi Shuangyu;Luo Chunxiong;Ouyang Qi
42 DNA damage strength modulates a bimodal switch of p53 dynamics for cell-fate control 期刊论文 Xi Chen;Jia Chen;Siting Gan;Huaji Guan;Yuan Zhou;Jue Shi;Qi Ouyang
43 Do Intrinsically Disordered Proteins Possess High Specificity in ProteinProtein Interactions? 期刊论文 Huang Yongqi;Liu Zhirong
44 A mutation degree model for the identification of transcriptional regulatory elements 期刊论文 Zhang Changqing;Wang Jin;Hua Xu;Fang Jinggui;Zhu Huaiqiu;Gao Xiang
45 A Formalized Design Process for Bacterial Consortia That Perform Logic Computing 期刊论文 Ji Weiyue;Shi Handuo;Zhang Haoqian;Sun Rui;Xi Jingyi;Wen Dingqiao;Feng Jingchen;Chen Yiwei;Qin Xiao;Ma Yanrong;Luo Wenhan;Deng Linna;Lin Hanchi;Yu Ruofan;Ouyang Qi
46 Calumenin-15 facilitates filopodia formation by promoting TGF-beta superfamily cytokine GDF-15 transcription 期刊论文 Hui Feng;Liang Chen;Qiao Wang;Birong Shen;Lin Liu;Pengli Zheng;Sizheng Xu;Xiao Liu;Jianguo Chen;Junlin Teng
47 A comprehensive analysis of the influence of drug binding kinetics on drug action at molecular and systems levels 期刊论文 Yin Ning;Pei Jianfeng;Lai Luhua
48 Designing Synthetic Regulatory Networks Capable of Self-Organizing Cell Polarization 期刊论文 Chau Angela H.;Walter Jessica M.;Gerardin Jaline;Tang Chao;Lim Wendell A.
49 Single Cell Analysis of Yeast Replicative Aging Using a New Generation of Microfluidic Device 期刊论文 Zhang Yi;Luo Chunxiong;Zou Ke;Xie Zhengwei;Brandman Onn;Ouyang Qi;Li Hao
50 Computational Identification of a New Binding Site in Influenza Virus Hemagglutinin for Membrane Fusion Inhibitors 期刊论文 Sun Lidan;Tian Feng;Feng Baosheng;Liu Zhenming;Zhang Liangren;Pei Jianfeng
51 蛋白质相互作用预测、设计与调控 期刊论文 张长胜;来鲁华;ZHANG Chang-Sheng 1 2 3 LAI Lu-Hua 1 2 3 (1 Beijing National Laboratory for Molecular Science State Key Laboratory of Structural Chemistry for Stable and Unstable Species Institute of Physical Chemistry College of Chemistry and Molecular Engineering Peking University Beijing 100871 P.R.China;2 Center for Quantitative Biology Peking University Beijing 100871 P.R.China;3 Peking-Tsinghua Center for Life Sciences Beijing 100871 P.R.China)
52 Experimental evidence of using a circularly polarized electric field to control spiral turbulence 期刊论文 Ji, Lin|Zhou, Yi|Zhou, Yi|Li, Qian|Li, Qian|Qiao, Chun|Qiao, Chun|Ouyang, Qi|Ouyang, Qi|
53 Mass production of highly monodisperse polymeric nanoparticles by parallel flow focusing system 期刊论文 Kang Xianjie;Luo Chunxiong;Wei Qiong;Xiong Chunyang;Chen Qian;Chen Ying;Ouyang Qi
54 Frequency-Dependent Escherichia coli Chemotaxis Behavior 期刊论文 Zhu Xuejun;Si Guangwei;Deng Nianpei;Ouyang Qi(欧阳颀);Wu Tailin(吴泰霖);He Zhuoran(贺卓然);Jiang Lili;Luo Chunxiong;Tu Yuhai
55 Automatch: Target-binding protein design and enzyme design by automatic pinpointing potential active sites in available protein scaffolds 期刊论文 Changsheng Zhang;Luhua Lai
56 Gene prediction in metagenomic fragments based on the SVM algorithm 期刊论文 Liu, Yongchu|Guo, Jiangtao|Hu, Gangqing|Zhu, Huaiqiu|
57 A de novo metagenomic assembly program for shotgun DNA reads 期刊论文 Lai Binbin;Ding Ruogu;Li Yang;Duan Liping;Zhu Huaiqiu
58 Flux Balance Analysis of Ammonia Assimilation Network in E.coli Predicts Preferred Regulation Point 期刊论文 Qi Ouyang
59 Understanding molecular mechanisms of traditional Chinese medicine for the treatment of influenza viruses infection by computational approaches 期刊论文 Gu, Shuo|Yin, Ning|Pei, Jianfeng|Lai, Luhua|
60 Tailoring the pH Dependence of Human Non-pancreatic Secretory Phospholipase A(2) by Engineering Surface Charges 期刊论文 Qiu, Shunchen|Lai, Luhua|
61 Kinetic Advantage of Intrinsically Disordered Proteins in Coupled Folding-Binding Process: A Critical Assessment of the Fly-Casting Mechanism (vol 393, pg 1143, 2009) 期刊论文 Huang Yongqi;Liu Zhirong
62 Dose-Response Aligned Circuits in Signaling Systems 期刊论文 Long Yan|Qi Ouyang|Hongli Wang|
63 Pathway-Based Mean-Field Model for Escherichia coli Chemotaxis 期刊论文 Si Guangwei;Wu Tailin(吴泰霖);Ouyang Qi(欧阳颀);Tu Yuhai
64 Predicting kinetic constants of protein-protein interactions based on structural properties 期刊论文 Bai Hongjun;Yang Kun;Yu Daqi;Zhang Changsheng;Chen Fangjin;Lai Luhua
65 LigBuilder 2: A Practical de Novo Drug Design Approach 期刊论文 Yuan Yaxia;Pei Jianfeng;Lai Luhua
66 SDOCK: A Global Protein-Protein Docking Program Using Stepwise Force-Field Potentials 期刊论文 Zhang Changsheng;Lai Luhua
67 Evidences for the unfolding mechanism of three-dimensional domain swapping 期刊论文 Liu Zhirong;Huang Yongqi
68 Integrating Phosphorylation Network with Transcriptional Network Reveals Novel Functional Relationships 期刊论文 Wang Lin;Hou Lin;Qian Minping;Deng Minghua
69 Cell cycle synchronization by nutrient modulation 期刊论文 Tian Yuan;Luo Chunxiong;Lu Yuheng;Tang Chao;Ouyang Qi
70 Microsomal prostaglandin E synthase-1 exhibits one-third-of-the-sites reactivity 期刊论文 He Shan;Wu Yiran;Yu Daqi;Lai Luhua
71 Molecular Docking and Competitive Binding Study Discovered Different Binding Modes of Microsomal Prostaglandin E Synthase-1 Inhibitors 期刊论文 He, Shan|Lai, Luhua|
72 Molecular phenotyping of aging in single yeast cells using a novel microfluidic device 期刊论文 Xie Zhengwei;Zhang Yi;Zou Ke;Brandman Onn;Luo Chunxiong;Ouyang Qi;Li Hao
73 Dynamic Modeling of Human 5-Lipoxygenase-Inhibitor Interactions Helps To Discover Novel Inhibitors 期刊论文 Wu Yiran;He Chong;Gao Yang;He Shan;Liu Ying;Lai Luhua
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